Honigmann Alf, Nadler André
Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauerstraße 108, 01307 Dresden, Germany.
Biochemistry. 2018 Jan 9;57(1):47-55. doi: 10.1021/acs.biochem.7b01060. Epub 2017 Dec 18.
Researchers striving to convert biology into an exact science foremost rely on structural biology and biochemical reconstitution approaches to obtain quantitative data. However, cell biological research is moving at an ever-accelerating speed into areas where these approaches lose much of their edge. Intrinsically unstructured proteins and biochemical interaction networks composed of interchangeable, multivalent, and unspecific interactions pose unique challenges to quantitative biology, as do processes that occur in discrete cellular microenvironments. Here we argue that a conceptual change in our way of conducting biochemical experiments is required to take on these new challenges. We propose that reconstitution of cellular processes in vitro should be much more focused on mimicking the cellular environment in vivo, an approach that requires detailed knowledge of the material properties of cellular compartments, essentially requiring a material science of the cell. In a similar vein, we suggest that quantitative biochemical experiments in vitro should be accompanied by corresponding experiments in vivo, as many newly relevant cellular processes are highly context-dependent. In essence, this constitutes a call for chemical biologists to convert their discipline from a proof-of-principle science to an area that could rightfully be called quantitative biochemistry in living cells. In this essay, we discuss novel techniques and experimental strategies with regard to their potential to fulfill such ambitious aims.
致力于将生物学转变为一门精确科学的研究人员首先依赖结构生物学和生化重组方法来获取定量数据。然而,细胞生物学研究正以前所未有的速度进入这些方法优势不再明显的领域。内在无序的蛋白质以及由可互换、多价和非特异性相互作用组成的生化相互作用网络,给定量生物学带来了独特的挑战,在离散细胞微环境中发生的过程也是如此。在此,我们认为需要在进行生化实验的方式上进行观念转变,以应对这些新挑战。我们建议,体外细胞过程的重组应更专注于模拟体内细胞环境,这种方法需要详细了解细胞区室的材料特性,本质上需要一门细胞材料科学。同样,我们建议体外定量生化实验应辅以相应的体内实验,因为许多新出现的相关细胞过程高度依赖于环境。从本质上讲,这是呼吁化学生物学家将他们的学科从一门原理验证科学转变为一个可以恰当地称为活细胞定量生物化学的领域。在本文中,我们将讨论新技术和实验策略在实现这些宏伟目标方面的潜力。