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早期骨折血肿中受固定稳定性影响的关键基因的鉴定及其在骨折愈合中的作用阐明。

Identification of key genes influenced by fixation stability in early fracture hematoma and elucidation of their roles in fracture healing.

作者信息

Wang Chengxue, Qi Baochang, Zhang Congfeng, Cheng Jieping

机构信息

Department of Orthopedic Trauma, The First Hospital of Jilin University, Changchun, Jilin 130021, P.R. China.

Department of Orthopedics, The Second People's Hospital of Yushu, Changchun, Jilin 130041, P.R. China.

出版信息

Exp Ther Med. 2017 Nov;14(5):4633-4638. doi: 10.3892/etm.2017.5192. Epub 2017 Sep 22.

Abstract

The present study aimed to identify the key genes influenced by fixation stability in early fracture hematoma and to elucidate their roles in fracture healing. The GSE53256 gene expression profile, including six fracture hematoma tissues, was downloaded from the Gene Expression Omnibus database. The differentially expressed genes (DEGs) in the fracture hematoma tissues from old rats with rigid fixation compared with semi-rigid fixation were identified using the limma package. Furthermore, Gene Ontology (GO) enrichment analysis for DEGs was performed using BiNGO, and a protein-protein interaction (PPI) network was constructed based on the Search Tool for the Retrieval of Interacting Genes database. A total of 265 DEGs (158 upregulated and 107 downregulated) in the fracture hematoma tissues were screened out. Additionally, the overrepresented GO terms were mainly associated with the extracellular region, positive regulation of locomotion and response to external stimulus. Transforming growth factor, β 1 (Tgfβ1), chemokine (C-X-C motif) ligand 12 (Cxcl12), matrix metallopeptidase 9 (mmp9) and serpin peptidase inhibitor, clade E, member 1 (serpine1) had higher degrees and were hub nodes in the PPI network. In conclusion, fixation stability may influence the fracture healing process, and important DEGs, including Cxcl12, mmp9, Tgfβ1 and serpine1, may be important in this process.

摘要

本研究旨在鉴定早期骨折血肿中受固定稳定性影响的关键基因,并阐明它们在骨折愈合中的作用。从基因表达综合数据库下载了包括六个骨折血肿组织的GSE53256基因表达谱。使用limma软件包鉴定了与半刚性固定相比,刚性固定老龄大鼠骨折血肿组织中的差异表达基因(DEG)。此外,使用BiNGO对DEG进行基因本体(GO)富集分析,并基于相互作用基因检索工具数据库构建蛋白质-蛋白质相互作用(PPI)网络。在骨折血肿组织中共筛选出265个DEG(158个上调和107个下调)。此外,过度表达的GO术语主要与细胞外区域、运动的正调控和对外部刺激的反应有关。转化生长因子β1(Tgfβ1)、趋化因子(C-X-C基序)配体12(Cxcl12)、基质金属肽酶9(mmp9)和丝氨酸蛋白酶抑制剂E族成员1(serpine1)具有较高的度数,是PPI网络中的枢纽节点。总之,固定稳定性可能影响骨折愈合过程,包括Cxcl12、mmp9、Tgfβ1和serpine1在内的重要DEG在此过程中可能起重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b67/5704280/c5ba2cc28a06/etm-14-05-4633-g00.jpg

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