Arragain Simon, Jiménez-Vicente Emilio, Scandurra Alessandro A, Burén Stefan, Rubio Luis M, Echavarri-Erasun Carlos
Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.
Front Plant Sci. 2017 Nov 14;8:1947. doi: 10.3389/fpls.2017.01947. eCollection 2017.
One of the main hurdles to engineer nitrogenase in a non-diazotrophic host is achieving NifB activity. NifB is an extremely unstable and oxygen sensitive protein that catalyzes a low-potential SAM-radical dependent reaction. The product of NifB activity is called NifB-co, a complex [8Fe-9S-C] cluster that serves as obligate intermediate in the biosyntheses of the active-site cofactors of all known nitrogenases. Here we study the diversity and phylogeny of naturally occurring NifB proteins, their protein architecture and the functions of the distinct NifB domains in order to understand what defines a catalytically active NifB. Focus is on NifB from the thermophile (two-domain architecture), the hyperthermophile (single-domain architecture) and the mesophile (two-domain architecture), showing characterization of their nitrogen fixation () gene clusters, conserved NifB motifs, and functionality. and NifB were able to complement an (Δ) mutant restoring the Nif phenotype and thus demonstrating their functionality . In addition, purified NifB exhibited activity in the NifB-dependent nitrogenase reconstitution assay. Intriguingly, changing the two-domain NifB to single-domain by removal of the C-terminal NifX-like extension resulted in higher nitrogenase activity, demonstrating that this domain is not required for nitrogen fixation in mesophiles.
在非固氮宿主中构建固氮酶的主要障碍之一是实现NifB活性。NifB是一种极其不稳定且对氧敏感的蛋白质,它催化一个低电位的依赖SAM自由基的反应。NifB活性的产物称为NifB-co,是一种复杂的[8Fe-9S-C]簇,在所有已知固氮酶活性位点辅因子的生物合成中作为必需的中间体。在这里,我们研究天然存在的NifB蛋白的多样性和系统发育、它们的蛋白质结构以及不同NifB结构域的功能,以便了解决定催化活性NifB的因素。重点是来自嗜热菌(两结构域结构)、超嗜热菌(单结构域结构)和嗜温菌(两结构域结构)的NifB,展示了它们固氮()基因簇的特征、保守的NifB基序和功能。 和 NifB能够互补一个(Δ)突变体,恢复Nif表型,从而证明它们的功能。此外,纯化的 NifB在依赖NifB的固氮酶重构试验中表现出活性。有趣的是,通过去除C端类似NifX的延伸将两结构域的NifB变为单结构域,导致更高的固氮酶活性,表明该结构域对于嗜温菌的固氮不是必需的。