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嗜酸氧化亚铁硫杆菌YQH-1的基因组草图序列

Draft genome sequence of Acidithiobacillus ferrooxidans YQH-1.

作者信息

Yan Lei, Zhang Shuang, Wang Weidong, Hu Huixin, Wang Yanjie, Yu Gaobo, Chen Peng

机构信息

College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Xinfeng Road No. 5, Daqing 163319, PR China.

School of Pharmacy, Lanzhou University, Tianshui Road No. 222, Lanzhou 730000, PR China.

出版信息

Genom Data. 2015 Oct 19;6:269-70. doi: 10.1016/j.gdata.2015.10.009. eCollection 2015 Dec.

DOI:10.1016/j.gdata.2015.10.009
PMID:26697394
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4664765/
Abstract

Acidithiobacillus ferrooxidans YQH-1 is a moderate acidophilic bacterium isolated from a river in a volcano of Northeast China. Here, we describe the draft genome of strain YQH-1, which was assembled into 123 contigs containing 3,111,222 bp with a G + C content of 58.63%. A large number of genes related to carbon dioxide fixation, dinitrogen fixation, pH tolerance, heavy metal detoxification, and oxidative stress defense were detected. The genome sequence can be accessed at DDBJ/EMBL/GenBank under the accession no. LJBT00000000.

摘要

嗜酸氧化亚铁硫杆菌YQH-1是从中国东北一座火山的河流中分离出的中度嗜酸细菌。在此,我们描述了菌株YQH-1的基因组草图,该草图组装成123个重叠群,包含3,111,222 bp,G + C含量为58.63%。检测到大量与二氧化碳固定、固氮、耐pH值、重金属解毒和氧化应激防御相关的基因。该基因组序列可在DDBJ/EMBL/GenBank上获取,登录号为LJBT00000000。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5505/4664765/9dfe2335daec/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5505/4664765/9dfe2335daec/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5505/4664765/9dfe2335daec/gr1.jpg

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本文引用的文献

1
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BMC Microbiol. 2010 Aug 27;10:229. doi: 10.1186/1471-2180-10-229.
2
Biosorption of inorganic and organic arsenic from aqueous solution by Acidithiobacillus ferrooxidans BY-3.氧化亚铁硫杆菌 BY-3 从水溶液中吸附无机和有机砷。
J Hazard Mater. 2010 Jun 15;178(1-3):209-17. doi: 10.1016/j.jhazmat.2010.01.065. Epub 2010 Jan 18.
3
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.
极端环境中生物采矿微生物组学技术应用的最新进展。
Microb Cell Fact. 2021 Sep 8;20(1):178. doi: 10.1186/s12934-021-01671-7.
4
Integration of Biological Networks for Describes a Modular Gene Regulatory Organization of Bioleaching Pathways.生物网络整合用于描述生物浸出途径的模块化基因调控组织。
Front Mol Biosci. 2020 Jan 10;6:155. doi: 10.3389/fmolb.2019.00155. eCollection 2019.
5
Complete Genome Sequence of YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile.嗜酸性亚铁和硫氧化菌株YNTRS-40的全基因组序列
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6
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7
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Curr Microbiol. 2018 Jul;75(7):818-826. doi: 10.1007/s00284-018-1453-9. Epub 2018 Feb 20.
8
Molecular Systematics of the Genus : Insights into the Phylogenetic Structure and Diversification of the Taxon.该属的分子系统学:对该分类单元系统发育结构和多样化的见解。
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9
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Front Microbiol. 2016 Dec 27;7:2035. doi: 10.3389/fmicb.2016.02035. eCollection 2016.
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BMC Genomics. 2008 Dec 11;9:597. doi: 10.1186/1471-2164-9-597.
4
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒:使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
5
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer:核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
6
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
7
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.用于检测tRNA和snoRNA的tRNAscan-SE、snoscan和snoGPS网络服务器。
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8
The COG database: an updated version includes eukaryotes.COG数据库:更新版本涵盖真核生物。
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