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气道微生物组研究:对监测培养的现代观点?

Airway microbiome research: a modern perspective on surveillance cultures?

作者信息

Roux Damien, van Oort Pouline M, Ricard Jean-Damien, Bos Lieuwe D J

机构信息

Inserm, IAME, UMR 1137, Paris Diderot University, Paris, France.

Department of Intensive Care, Academic Medical Center, Amsterdam, the Netherlands.

出版信息

Ann Transl Med. 2017 Nov;5(22):445. doi: 10.21037/atm.2017.08.05.

DOI:10.21037/atm.2017.08.05
PMID:29264362
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5721213/
Abstract

The incidence of ventilator-associated pneumonia (VAP) is estimated to be around 10% in a high-risk population. Over the last decade, major improvements have been made in the prevention of VAP, with great cost-effectiveness. However, we still do not understand the exact pathogenesis of VAP. A better understanding might explain why some patients develop ventilator-associated tracheobronchitis, while others develop VAP even though they are infected with the same types of pathogens. Microbiome research has been a hot topic in translational medicine over the past decade. Slowly, microbiome research has also been introduced to the intensive care setting. One of the areas where it may influence our pathophysiological considerations is in VAP. The adapted island has been proposed for the colonization and infection of the respiratory tract. In this model, not only the immigration of bacteria into the lung is important, but elimination and regional growth factors are of equal significance. The importance of these factors can be supported by epidemiological studies. Several small observational studies on the development of the pulmonary microbiome during mechanical ventilation also support this theory. We speculate on the consequences of the newest insights in microbiome research on the prevention and targeted treatment of VAP. We conclude that there is still a strong need for more in-depth analyses of the changes in the microbial composition of the pulmonary microbiome during mechanical ventilation and with the development of VAP.

摘要

据估计,高危人群中呼吸机相关性肺炎(VAP)的发病率约为10%。在过去十年中,VAP的预防取得了重大进展,具有很高的成本效益。然而,我们仍然不清楚VAP的确切发病机制。更好地理解这一点或许可以解释为什么有些患者会发生呼吸机相关性气管支气管炎,而另一些患者即使感染了相同类型的病原体却会发生VAP。微生物组研究在过去十年一直是转化医学中的热门话题。慢慢地,微生物组研究也被引入到重症监护领域。它可能影响我们病理生理学思考的一个领域就是VAP。有人提出了适应性岛屿用于呼吸道的定植和感染。在这个模型中,不仅细菌向肺部的迁移很重要,清除和局部生长因子同样具有重要意义。这些因素的重要性得到了流行病学研究的支持。几项关于机械通气期间肺部微生物组发育的小型观察性研究也支持这一理论。我们推测微生物组研究的最新见解对VAP预防和靶向治疗的影响。我们得出结论,仍然非常需要对机械通气期间以及VAP发生过程中肺部微生物组的微生物组成变化进行更深入的分析。

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EBioMedicine. 2020 Oct;60:102995. doi: 10.1016/j.ebiom.2020.102995. Epub 2020 Sep 16.
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Changes in lung microbiome do not explain the development of ventilator-associated pneumonia.肺部微生物群的变化并不能解释呼吸机相关性肺炎的发生。
Intensive Care Med. 2019 Aug;45(8):1133-1135. doi: 10.1007/s00134-019-05691-1. Epub 2019 Jul 17.
3
Ventilator-associated events versus ventilator-associated respiratory infections-moving into a new paradigm or merging both concepts, instead?呼吸机相关事件与呼吸机相关呼吸道感染——是迈入新范式,还是将这两个概念合并?
Ann Transl Med. 2018 Nov;6(21):425. doi: 10.21037/atm.2018.10.54.

本文引用的文献

1
Ecological networking of cystic fibrosis lung infections.囊性纤维化肺部感染的生态网络
NPJ Biofilms Microbiomes. 2016 Dec 2;2:4. doi: 10.1038/s41522-016-0002-1. eCollection 2016.
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Selective decontamination of the digestive tract halves the prevalence of ventilator-associated pneumonia compared to selective oral decontamination.与选择性口腔去污相比,消化道选择性去污可使呼吸机相关性肺炎的患病率减半。
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Ten ineffective interventions to prevent ventilator-associated pneumonia.十种预防呼吸机相关性肺炎的无效干预措施。
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Bacterial Topography of the Healthy Human Lower Respiratory Tract.健康人下呼吸道的细菌分布情况
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The dynamics of the pulmonary microbiome during mechanical ventilation in the intensive care unit and the association with occurrence of pneumonia.机械通气期间重症监护病房肺部微生物组的动态变化及其与肺炎发生的关系。
Thorax. 2017 Sep;72(9):803-810. doi: 10.1136/thoraxjnl-2016-209158. Epub 2017 Jan 18.
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Nebulized antibiotics in mechanically ventilated patients: roadmap and challenges.机械通气患者雾化吸入抗生素:路线图与挑战
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Randomised, double-blind, placebo-controlled trial with azithromycin selects for anti-inflammatory microbial metabolites in the emphysematous lung.阿奇霉素随机、双盲、安慰剂对照试验筛选出肺气肿肺中的抗炎性微生物代谢产物。
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Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data.成分分析:一种分析微生物群落高通量测序数据的有效方法。
Can J Microbiol. 2016 Aug;62(8):692-703. doi: 10.1139/cjm-2015-0821. Epub 2016 Apr 12.
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