模式植物病原体SCC1的基因组序列。
Genome sequence of the model plant pathogen SCC1.
作者信息
Niemi Outi, Laine Pia, Koskinen Patrik, Pasanen Miia, Pennanen Ville, Harjunpää Heidi, Nykyri Johanna, Holm Liisa, Paulin Lars, Auvinen Petri, Palva E Tapio, Pirhonen Minna
机构信息
Division of Genetics, Department of Biosciences, University of Helsinki, Helsinki, Finland.
Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland.
出版信息
Stand Genomic Sci. 2017 Dec 20;12:87. doi: 10.1186/s40793-017-0301-z. eCollection 2017.
Bacteria of the genus are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980's. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes.
该属细菌是具有重要经济意义的植物病原体，可在多种植物物种上引发软腐病。在此，我们报告了菌株SCC1的基因组序列，这是一株芬兰软腐病模型菌株，于20世纪80年代初从患病马铃薯块茎中分离得到。菌株SCC1的基因组由一条4,974,798 bp的环状染色体和一条5524 bp的环状质粒组成。总共预测出4451个基因，其中4349个为蛋白质编码基因，102个为RNA基因。
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