Deng Yuchen, Gu Jiawei, Yan Zhenpeng, Wang Mengdi, Ma Chaoqun, Zhang Jiafeng, Jiang Guixian, Ge Mengxiao, Xu Shuogui, Xu Zheng, Xiao Liang
Naval Clinical Medicine, Faculty of Naval Medicine, Second Military Medical University, Shanghai, 200433, China.
Clinical Medicine, Second Military Medical University, Shanghai, 200433, China.
Toxicon. 2018 Mar 1;143:1-19. doi: 10.1016/j.toxicon.2017.12.051. Epub 2018 Jan 2.
Scorpion, as an ancient species, has been widely used on dozens of human diseases in traditional Chinese Medicine. Although the scorpion venom from the Buthidae family with the potent toxicity attracts more interests, toxins from the non-Buthidae family draw great attention as well because of its abundance and complexity even without harm to mammals. Moreover, several toxic components of scorpion venom have been identified as valuable scaffolds for the drug design and development. Using the Next Generation Sequencing (NGS) technique, here we reported the transcriptome of the venomous glands of Heterometrus spinifer, a non-Buthidae scorpion that only a few toxic and complete components have been identified known-to-date. The total mRNA extracted from the venomous glands of H. spinifer was subjected to illumina sequencing with a strategy of de novo assembly, and a total of 54 189 transcripts were unigenes from a total of 88 311 600 determined reads. We annotated 18 567 (34.26%) unigenes from NR database, 12 258 (22.62%) from SWISSPROT database, 11 161 (20.60%) from GO database, 10 159 (18.75%) from COG database and 5059 (9.34%) from KEGG database, respectively. 2843 unigenes were further selected against the toxin-related sub-database of SWISSPROT. After removing the redundancy, 13 common toxin-related subfamilies with 62 unigenes were manually confirmed, including 8 K-toxins, 1 calcin, 3 Imperatoxin I-like, 2 La1-like, 1 scorpin-like, 3 antimicrobial peptides, two types of protease inhibitors such as 8 Kunitz-type protease inhibitors and 3 Ascaris-type protease inhibitors, and 33 proteases including 16 serine proteinases, 7 phospholipases, 5 metalloproteases, 3 hyaluronidases and 2 phosphatases. Our report is the first transcriptomic analyses of venomous glands from the scorpion H. spinifer, serving as a public information platform for the development of novel bio-therapeutics.
蝎子作为一种古老的物种,在中医中已被广泛用于治疗多种人类疾病。虽然具有强毒性的钳蝎科蝎子毒液吸引了更多关注,但非钳蝎科蝎子的毒素也因其丰富性和复杂性而备受关注,即便对哺乳动物无害。此外,蝎毒的几种有毒成分已被确定为药物设计和开发的有价值支架。利用下一代测序(NGS)技术,我们在此报告了一种非钳蝎科蝎子——海南双针蝎毒腺的转录组,迄今为止,该蝎子仅鉴定出少数几种有毒且完整的成分。从海南双针蝎毒腺中提取的总mRNA采用从头组装策略进行Illumina测序,在总共88311600条测定读数中,共有54189个转录本为单基因。我们分别从NR数据库注释了18567个(34.26%)单基因,从SWISSPROT数据库注释了12258个(22.62%),从GO数据库注释了11161个(20.60%),从COG数据库注释了10159个(18.75%),从KEGG数据库注释了5059个(9.34%)。针对SWISSPROT的毒素相关子数据库进一步筛选出2843个单基因。去除冗余后,人工确认了13个常见的毒素相关亚家族,包含62个单基因,其中有8种K毒素、1种钙调蛋白、3种类Imperatoxin I、2种类La1、1种类蝎毒素、3种抗菌肽、两种蛋白酶抑制剂(8种Kunitz型蛋白酶抑制剂和3种蛔虫型蛋白酶抑制剂)以及33种蛋白酶(包括16种丝氨酸蛋白酶、7种磷脂酶、5种金属蛋白酶、3种透明质酸酶和2种磷酸酶)。我们的报告是对海南双针蝎毒腺的首次转录组分析,为新型生物治疗药物的开发提供了一个公共信息平台。