Department of Chemical Engineering, University of California, Santa Barbara, CA 93106.
Department of Chemical Engineering, University of California, Santa Barbara, CA 93106;
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):656-661. doi: 10.1073/pnas.1713452115. Epub 2018 Jan 8.
Desolvation barriers are present for solute-solvent exchange events, such as ligand binding to an enzyme active site, during protein folding, and at battery electrodes. For solution-grown crystals, desolvation at kink sites can be the rate-limiting step for growth. However, desolvation and the associated kinetic barriers are poorly understood. In this work, we use rare-event simulation techniques to investigate attachment/detachment events at kink sites of a NaCl crystal in water. We elucidate the desolvation mechanism and present an optimized reaction coordinate, which involves one solute collective variable and one solvent collective variable. The attachment/detachment pathways for Na and Cl are qualitatively similar, with quantitative differences that we attribute to different ion sizes and solvent coordination. The attachment barriers primarily result from kink site desolvation, while detachment barriers largely result from breaking ion-crystal bonds. We compute ion detachment rates from kink sites and compare with results from an independent study. We anticipate that the reaction coordinate and desolvation mechanism identified in this work may be applicable to other alkali halides.
去溶剂化势垒存在于溶质-溶剂交换事件中,如配体与酶活性位点的结合、蛋白质折叠过程中和电池电极中。对于溶液生长的晶体,扭结处的去溶剂化作用可能是生长的限速步骤。然而,去溶剂化作用及其相关的动力学势垒还了解甚少。在这项工作中,我们使用罕见事件模拟技术来研究水相中 NaCl 晶体扭结处的附着/脱附事件。我们阐明了去溶剂化机制,并提出了一个优化的反应坐标,其中涉及一个溶质集体变量和一个溶剂集体变量。Na 和 Cl 的附着/脱附途径在定性上是相似的,定量上的差异我们归因于不同的离子大小和溶剂配位。附着势垒主要是由于扭结处的去溶剂化作用,而脱附势垒主要是由于打破离子-晶体键。我们从扭结处计算了离子的脱附速率,并与独立研究的结果进行了比较。我们预计,这项工作中确定的反应坐标和去溶剂化机制可能适用于其他碱金属卤化物。