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8
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本文引用的文献

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Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen.广泛的染色体重排推动了无性病原体毒力的进化。
Genome Res. 2013 Aug;23(8):1271-82. doi: 10.1101/gr.152660.112. Epub 2013 May 16.
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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.通过 RNA-Seq 进行转录本组装和定量分析揭示了细胞分化过程中未注释的转录本和异构体转换。
Nat Biotechnol. 2010 May;28(5):511-5. doi: 10.1038/nbt.1621. Epub 2010 May 2.
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Assessing the gene space in draft genomes.评估草图基因组中的基因空间。
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.使用 EVidenceModeler 和 Program to Assemble Spliced Alignments 进行自动化真核基因结构注释。
Genome Biol. 2008 Jan 11;9(1):R7. doi: 10.1186/gb-2008-9-1-r7.
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Gene identification in novel eukaryotic genomes by self-training algorithm.基于自训练算法的新型真核生物基因组基因识别
Nucleic Acids Res. 2005 Nov 28;33(20):6494-506. doi: 10.1093/nar/gki937. Print 2005.
6
Electrophoretic karyotype and gene mapping of the vascular wilt fungus Verticillium dahliae.大丽轮枝菌的电泳核型分析及基因图谱绘制
FEMS Microbiol Lett. 2005 Apr 15;245(2):213-20. doi: 10.1016/j.femsle.2005.03.011.
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Automated generation of heuristics for biological sequence comparison.用于生物序列比较的启发式方法的自动生成。
BMC Bioinformatics. 2005 Feb 15;6:31. doi: 10.1186/1471-2105-6-31.
8
Gene prediction with a hidden Markov model and a new intron submodel.基于隐马尔可夫模型和新型内含子子模型的基因预测
Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25. doi: 10.1093/bioinformatics/btg1080.
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Sequence tag analysis of gene expression during pathogenic growth and microsclerotia development in the vascular wilt pathogen Verticillium dahliae.大丽轮枝菌致病生长及微菌核发育过程中基因表达的序列标签分析
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A tool for analyzing and annotating genomic sequences.一种用于分析和注释基因组序列的工具。
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一种侵入木质部的致死菌株的基因组序列

Genome Sequence of a Lethal Strain of Xylem-Invading .

作者信息

Jakše Jernej, Jelen Vid, Radišek Sebastjan, de Jonge Ronnie, Mandelc Stanislav, Majer Aljaž, Curk Tomaž, Zupan Blaž, Thomma Bart P H J, Javornik Branka

机构信息

Centre for Plant Biotechnology and Breeding, Department of Agronomy, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia

Centre for Plant Biotechnology and Breeding, Department of Agronomy, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.

出版信息

Genome Announc. 2018 Jan 11;6(2):e01458-17. doi: 10.1128/genomeA.01458-17.

DOI:10.1128/genomeA.01458-17
PMID:29326223
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5764947/
Abstract

, a soilborne vascular phytopathogenic fungus, causes wilt disease in several crop species. Of great concern are outbreaks of highly aggressive strains, which cause a devastating wilt disease in European hops. We report here the genome sequence and annotation of strain T2, providing genomic information that will allow better understanding of the molecular mechanisms underlying the development of highly aggressive strains.

摘要

是一种土传维管束植物病原真菌,可在多种作物上引发枯萎病。令人高度关注的是高致病性菌株的爆发,这些菌株在欧洲啤酒花中引发了毁灭性的枯萎病。我们在此报告菌株T2的基因组序列和注释,提供基因组信息,以便更好地理解高致病性菌株发育背后的分子机制。