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用于演化空间网络的平均场方法及其在骨细胞网络形成中的应用

Mean-field approach to evolving spatial networks, with an application to osteocyte network formation.

作者信息

Taylor-King Jake P, Basanta David, Chapman S Jonathan, Porter Mason A

机构信息

Mathematical Institute, University of Oxford, Oxford, OX2 6GG, United Kingdom.

Department of Integrated Mathematical Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida 33612, USA.

出版信息

Phys Rev E. 2017 Jul;96(1-1):012301. doi: 10.1103/PhysRevE.96.012301. Epub 2017 Jul 5.

Abstract

We consider evolving networks in which each node can have various associated properties (a state) in addition to those that arise from network structure. For example, each node can have a spatial location and a velocity, or it can have some more abstract internal property that describes something like a social trait. Edges between nodes are created and destroyed, and new nodes enter the system. We introduce a "local state degree distribution" (LSDD) as the degree distribution at a particular point in state space. We then make a mean-field assumption and thereby derive an integro-partial differential equation that is satisfied by the LSDD. We perform numerical experiments and find good agreement between solutions of the integro-differential equation and the LSDD from stochastic simulations of the full model. To illustrate our theory, we apply it to a simple model for osteocyte network formation within bones, with a view to understanding changes that may take place during cancer. Our results suggest that increased rates of differentiation lead to higher densities of osteocytes, but with a smaller number of dendrites. To help provide biological context, we also include an introduction to osteocytes, the formation of osteocyte networks, and the role of osteocytes in bone metastasis.

摘要

我们考虑演化网络,其中每个节点除了具有由网络结构产生的属性外,还可以具有各种相关属性(一种状态)。例如,每个节点可以具有空间位置和速度,或者它可以具有一些更抽象的内部属性,用于描述诸如社会特征之类的东西。节点之间的边会被创建和销毁,并且新节点会进入系统。我们引入“局部状态度分布”(LSDD)作为状态空间中特定点处的度分布。然后我们进行平均场假设,从而推导出一个由LSDD满足的积分 - 偏微分方程。我们进行了数值实验,发现积分 - 微分方程的解与完整模型的随机模拟得到的LSDD之间有很好的一致性。为了说明我们的理论,我们将其应用于一个简单的骨内骨细胞网络形成模型,以了解癌症期间可能发生的变化。我们的结果表明,分化速率的增加会导致骨细胞密度更高,但树突数量更少。为了帮助提供生物学背景,我们还介绍了骨细胞、骨细胞网络的形成以及骨细胞在骨转移中的作用。

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