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十种迟钝爱德华氏菌和“芬氏鲺爱德华氏菌”的比较基因组学揭示了鱼类病原菌的复杂进化。

Comparative Genomics of Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" Highlights Intricate Evolution of Fish-Pathogenic Species.

机构信息

VIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France.

Labofarm, Finalab, Loudéac, France.

出版信息

Genome Biol Evol. 2018 Feb 1;10(2):452-457. doi: 10.1093/gbe/evy020.

Abstract

The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and "T. finnmarkense" type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016).

摘要

该属 Tenacibaculum 包含多个对海洋鱼类具有致病性的物种。Tenacibaculum dicentrarchi 和 "Tenacibaculum finnmarkense"(引号表示尚未有效命名的物种)从养殖鱼类(如欧洲鲈鱼或大西洋鲑鱼)的皮肤损伤中被分离出来。它们引起一种称为 Tenacibaculosis 的疾病,在西班牙、挪威和智利的海洋养殖场已经报告了严重的爆发和重要的鱼类损失。我们在这里报告 T. dicentrarchi 和 "T. finnmarkense" 型菌株的基因组草案。将这些基因组与从智利和挪威田间分离株获得的基因组草案以及以前发表的 Tenacibaculum 基因组进行了比较。我们使用平均核苷酸同一性和基于核心基因组的系统发育作为物种边界划定的替代指标。这项工作突出了密切相关的鱼类病原体种的进化,并表明同源重组可能有助于基因组进化。它还纠正了 Grothusen 等人(2016 年)声称的菌株 AYD7486TD 的物种归属。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cd8/5793721/0add45870cd1/evy020f1.jpg

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