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南极嗜冷酵母的基因组揭示了一系列能够在持续寒冷的栖息地中对温度变化做出持续响应的系统。

The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat.

作者信息

Firdaus-Raih Mohd, Hashim Noor Haza Fazlin, Bharudin Izwan, Abu Bakar Mohd Faizal, Huang Kie Kyon, Alias Halimah, Lee Bernard K B, Mat Isa Mohd Noor, Mat-Sharani Shuhaila, Sulaiman Suhaila, Tay Lih Jinq, Zolkefli Radziah, Muhammad Noor Yusuf, Law Douglas Sie Nguong, Abdul Rahman Siti Hamidah, Md-Illias Rosli, Abu Bakar Farah Diba, Najimudin Nazalan, Abdul Murad Abdul Munir, Mahadi Nor Muhammad

机构信息

School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia.

Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia.

出版信息

PLoS One. 2018 Jan 31;13(1):e0189947. doi: 10.1371/journal.pone.0189947. eCollection 2018.

DOI:10.1371/journal.pone.0189947
PMID:29385175
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5791967/
Abstract

Extremely low temperatures present various challenges to life that include ice formation and effects on metabolic capacity. Psyhcrophilic microorganisms typically have an array of mechanisms to enable survival in cold temperatures. In this study, we sequenced and analysed the genome of a psychrophilic yeast isolated in the Antarctic region, Glaciozyma antarctica. The genome annotation identified 7857 protein coding sequences. From the genome sequence analysis we were able to identify genes that encoded for proteins known to be associated with cold survival, in addition to annotating genes that are unique to G. antarctica. For genes that are known to be involved in cold adaptation such as anti-freeze proteins (AFPs), our gene expression analysis revealed that they were differentially transcribed over time and in response to different temperatures. This indicated the presence of an array of adaptation systems that can respond to a changing but persistent cold environment. We were also able to validate the activity of all the AFPs annotated where the recombinant AFPs demonstrated anti-freeze capacity. This work is an important foundation for further collective exploration into psychrophilic microbiology where among other potential, the genes unique to this species may represent a pool of novel mechanisms for cold survival.

摘要

极低温度给生命带来了各种挑战,包括结冰以及对代谢能力的影响。嗜冷微生物通常具有一系列机制以在低温环境中生存。在本研究中,我们对在南极地区分离出的嗜冷酵母——南极嗜冷酵母(Glaciozyma antarctica)的基因组进行了测序和分析。基因组注释识别出7857个蛋白质编码序列。通过基因组序列分析,我们不仅能够识别出编码已知与低温存活相关蛋白质的基因,还能对南极嗜冷酵母特有的基因进行注释。对于已知参与冷适应的基因,如抗冻蛋白(AFP),我们的基因表达分析表明,它们在不同时间以及对不同温度的响应中存在差异转录。这表明存在一系列能够应对不断变化但持续低温环境的适应系统。我们还能够验证所有注释的抗冻蛋白的活性,其中重组抗冻蛋白表现出抗冻能力。这项工作是进一步深入探索嗜冷微生物学的重要基础,在其他潜在方面,该物种特有的基因可能代表了一系列新的低温存活机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/874cac9912a2/pone.0189947.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/5d0a2680586c/pone.0189947.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/3ba15816071c/pone.0189947.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/d175fa7cc2dd/pone.0189947.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/874cac9912a2/pone.0189947.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/5d0a2680586c/pone.0189947.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/3ba15816071c/pone.0189947.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/d175fa7cc2dd/pone.0189947.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81f1/5791967/874cac9912a2/pone.0189947.g004.jpg

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