利用乳腺组织病理学图像进行有丝分裂检测的高效深度学习模型。

Efficient deep learning model for mitosis detection using breast histopathology images.

机构信息

School of Medical Science and Technology, Indian Institute of Technology, Kharagpur, West Bengal, India.

Sorbonne University, Paris, France; Pontifical Catholic University of Peru, Lima, Peru.

出版信息

Comput Med Imaging Graph. 2018 Mar;64:29-40. doi: 10.1016/j.compmedimag.2017.12.001. Epub 2017 Dec 16.

Abstract

Mitosis detection is one of the critical factors of cancer prognosis, carrying significant diagnostic information required for breast cancer grading. It provides vital clues to estimate the aggressiveness and the proliferation rate of the tumour. The manual mitosis quantification from whole slide images is a very labor-intensive and challenging task. The aim of this study is to propose a supervised model to detect mitosis signature from breast histopathology WSI images. The model has been designed using deep learning architecture with handcrafted features. We used handcrafted features issued from previous medical challenges MITOS @ ICPR 2012, AMIDA-13 and projects (MICO ANR TecSan) expertise. The deep learning architecture mainly consists of five convolution layers, four max-pooling layers, four rectified linear units (ReLU), and two fully connected layers. ReLU has been used after each convolution layer as an activation function. Dropout layer has been included after first fully connected layer to avoid overfitting. Handcrafted features mainly consist of morphological, textural and intensity features. The proposed architecture has shown to have an improved 92% precision, 88% recall and 90% F-score. Prospectively, the proposed model will be very beneficial in routine exam, providing pathologists with efficient and - as we will prove - effective second opinion for breast cancer grading from whole slide images. Last but not the least, this model could lead junior and senior pathologists, as medical researchers, to a superior understanding and evaluation of breast cancer stage and genesis.

摘要

有丝分裂检测是癌症预后的关键因素之一,它提供了乳腺癌分级所需的重要诊断信息,为评估肿瘤的侵袭性和增殖率提供了重要线索。从全切片图像中手动进行有丝分裂定量是一项非常耗时且具有挑战性的任务。本研究旨在提出一种有监督模型,从乳腺组织病理学 WSI 图像中检测有丝分裂特征。该模型使用深度学习架构和手工制作的特征设计。我们使用了来自以前的医学挑战 MITOS@ICPR 2012、AMIDA-13 和项目(MICO ANR TecSan)专业知识的手工制作特征。深度学习架构主要由五个卷积层、四个最大池化层、四个修正线性单元(ReLU)和两个全连接层组成。ReLU 被用作每个卷积层后的激活函数。在第一个全连接层之后包含一个 dropout 层,以避免过拟合。手工制作的特征主要包括形态学、纹理和强度特征。所提出的架构已被证明具有提高的 92%精度、88%召回率和 90%F 分数。展望未来,该模型将非常有益于常规检查,为病理学家提供高效的、并且(正如我们将证明的那样)有效的全切片图像乳腺癌分级的辅助诊断。最后但并非最不重要的是,该模型可以使初级和高级病理学家(作为医学研究人员)能够更好地理解和评估乳腺癌的分期和发生。

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