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DeepMitosis:基于深度检测、验证和分割网络的有丝分裂检测。

DeepMitosis: Mitosis detection via deep detection, verification and segmentation networks.

机构信息

School of Electronics Information and Communications, Huazhong University of Science and Technology, Wuhan, PR China.

CIS Department, Temple University, Philadelphia, PA 19122, USA.

出版信息

Med Image Anal. 2018 Apr;45:121-133. doi: 10.1016/j.media.2017.12.002. Epub 2018 Jan 31.

DOI:10.1016/j.media.2017.12.002
PMID:29455111
Abstract

Mitotic count is a critical predictor of tumor aggressiveness in the breast cancer diagnosis. Nowadays mitosis counting is mainly performed by pathologists manually, which is extremely arduous and time-consuming. In this paper, we propose an accurate method for detecting the mitotic cells from histopathological slides using a novel multi-stage deep learning framework. Our method consists of a deep segmentation network for generating mitosis region when only a weak label is given (i.e., only the centroid pixel of mitosis is annotated), an elaborately designed deep detection network for localizing mitosis by using contextual region information, and a deep verification network for improving detection accuracy by removing false positives. We validate the proposed deep learning method on two widely used Mitosis Detection in Breast Cancer Histological Images (MITOSIS) datasets. Experimental results show that we can achieve the highest F-score on the MITOSIS dataset from ICPR 2012 grand challenge merely using the deep detection network. For the ICPR 2014 MITOSIS dataset that only provides the centroid location of mitosis, we employ the segmentation model to estimate the bounding box annotation for training the deep detection network. We also apply the verification model to eliminate some false positives produced from the detection model. By fusing scores of the detection and verification models, we achieve the state-of-the-art results. Moreover, our method is very fast with GPU computing, which makes it feasible for clinical practice.

摘要

有丝分裂计数是乳腺癌诊断中肿瘤侵袭性的一个关键预测指标。如今,有丝分裂计数主要由病理学家手动完成,这极其艰巨和耗时。在本文中,我们提出了一种使用新颖的多阶段深度学习框架从组织病理学幻灯片中检测有丝分裂细胞的准确方法。我们的方法包括一个深度分割网络,用于在仅给出弱标签(即仅注释有丝分裂的质心像素)时生成有丝分裂区域,一个精心设计的深度检测网络,用于利用上下文区域信息定位有丝分裂,以及一个深度验证网络,用于通过去除假阳性来提高检测准确性。我们在两个广泛使用的乳腺癌组织学图像中的有丝分裂检测(MITOSIS)数据集上验证了所提出的深度学习方法。实验结果表明,我们仅使用深度检测网络就可以在 ICPR 2012 大挑战的 MITOSIS 数据集上获得最高的 F 分数。对于仅提供有丝分裂质心位置的 ICPR 2014 MITOSIS 数据集,我们使用分割模型来估计边界框注释,以训练深度检测网络。我们还应用验证模型来消除检测模型产生的一些假阳性。通过融合检测和验证模型的得分,我们达到了最先进的水平。此外,我们的方法在 GPU 计算方面非常快速,这使其在临床实践中成为可行的选择。

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