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使用带有U-Net的级联卷积神经网络进行乳腺癌有丝分裂细胞检测。

Breast cancer mitotic cell detection using cascade convolutional neural network with U-Net.

作者信息

Lu Xi, You Zejun, Sun Miaomiao, Wu Jing, Zhang Zhihong

机构信息

School of Mechanical Engineering, Southeast University, Nanjing 211189, China.

Department of Pathology, The First Affiliated Hospital of Nanjing Medical University, Nanjing 210029, China.

出版信息

Math Biosci Eng. 2020 Dec 18;18(1):673-695. doi: 10.3934/mbe.2021036.

Abstract

The number of mitotic tumor cells detected in each slide is one of the key indicators of breast cancer prognosis. However, accurate mitotic cell counts are still a difficult problem for pathologists and related experts. Traditional methods use manual design algorithms to extract features of mitotic cells, and most methods rely on sliding windows to achieve pixel-level classification through deep learning. However, the complex background and high resolution of pathological images make the above methods time-consuming and ineffective. In order to solve the above problems, we propose a new cascaded convolutional neural network UBCNN (cascaded CNN based on UNet), which consists of three parts: semantic segmentation and classification to detect mitosis. First, we use an improved UNet ++ segmentation network to locate the candidate set of mitotic targets. Secondly, an adequately labeled cell nucleus data set is sent to an improved two-dimensional VNet network, and the cell nucleus is located by means of semantic segmentation to obtain accurate image blocks of mitotic and non-mitotic cells. Finally, the obtained cell image block is used to train a convolutional neural network to achieve binary classification, and the candidate set area is screened to retain the final result of mitosis cells. This paper verifies the detection effect of the above-mentioned cascade detection algorithm on the ICPR 2012 and 2014 mitosis automatic detection competition data sets. The evaluation indicators include accuracy, recall and F-score. Our cascade detection algorithm based on segmentation and classification reached 0.831 on the ICPR 2012 data set and 0.576 on the ICPR 2014 data set. Compared with other existing algorithms, the detection effect was improved, which was very competitive.

摘要

每张载玻片上检测到的有丝分裂肿瘤细胞数量是乳腺癌预后的关键指标之一。然而,准确的有丝分裂细胞计数对病理学家和相关专家来说仍然是个难题。传统方法使用人工设计的算法来提取有丝分裂细胞的特征,并且大多数方法依靠滑动窗口通过深度学习实现像素级分类。然而,病理图像复杂的背景和高分辨率使得上述方法既耗时又低效。为了解决上述问题,我们提出了一种新的级联卷积神经网络UBCNN(基于UNet的级联卷积神经网络),它由三部分组成:用于检测有丝分裂的语义分割和分类。首先,我们使用改进的UNet++分割网络来定位有丝分裂目标的候选集。其次,将一个标注充分的细胞核数据集送入改进的二维VNet网络,通过语义分割定位细胞核,以获得有丝分裂和非有丝分裂细胞的精确图像块。最后,将获得的细胞图像块用于训练卷积神经网络以实现二分类,对候选集区域进行筛选以保留有丝分裂细胞的最终结果。本文在ICPR 2012和2014有丝分裂自动检测竞赛数据集上验证了上述级联检测算法的检测效果。评估指标包括准确率、召回率和F值。我们基于分割和分类的级联检测算法在ICPR 2012数据集上达到了0.831,在ICPR 2014数据集上达到了0.576。与其他现有算法相比,检测效果得到了提升,具有很强的竞争力。

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