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人类胰岛素样生长因子 2 的复杂遗传结构并未反映在公共数据库中。

The complex genetics of human insulin-like growth factor 2 are not reflected in public databases.

机构信息

From the Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech Health University Health Sciences Center, El Paso, Texas 79905

出版信息

J Biol Chem. 2018 Mar 23;293(12):4324-4333. doi: 10.1074/jbc.RA117.001573. Epub 2018 Feb 2.

Abstract

Recent advances in genetics present unique opportunities for enhancing knowledge about human physiology and disease susceptibility. Understanding this information at the individual gene level is challenging and requires extracting, collating, and interpreting data from a variety of public gene repositories. Here, I illustrate this challenge by analyzing the gene for human insulin-like growth factor 2 () through the lens of several databases. IGF2, a 67-amino acid secreted peptide, is essential for normal prenatal growth and is involved in other physiological and pathophysiological processes in humans. Surprisingly, none of the genetic databases accurately described or completely delineated human gene structure or transcript expression, even though all relevant information could be found in the published literature. Although shares multiple features with the mouse gene, it has several unique properties, including transcription from five promoters. Both genes undergo parental imprinting, with / being expressed primarily from the paternal chromosome and the adjacent gene from the maternal chromosome. Unlike mouse , whose expression declines after birth, human remains active throughout life. This characteristic has been attributed to a unique human gene promoter that escapes imprinting, but as shown here, it involves several different promoters with distinct tissue-specific expression patterns. Because new testable hypotheses could lead to critical insights into IGF2 actions in human physiology and disease, it is incumbent that our fundamental understanding is accurate. Similar challenges affecting knowledge of other human genes should promote attempts to critically evaluate, interpret, and correct human genetic data in publicly available databases.

摘要

遗传学的最新进展为增强人类生理学和疾病易感性知识提供了独特的机会。在个体基因水平上理解这些信息具有挑战性,需要从各种公共基因库中提取、整理和解释数据。在这里,我通过分析人类胰岛素样生长因子 2 (IGF2)基因,从几个数据库的角度说明了这一挑战。IGF2 是一种 67 个氨基酸的分泌肽,对于正常的产前生长至关重要,并且参与人类的其他生理和病理生理过程。令人惊讶的是,即使所有相关信息都可以在已发表的文献中找到,但没有一个遗传数据库能够准确描述或完全描绘人类 IGF2 基因结构或转录表达。尽管 IGF2 与小鼠 IGF2 基因有许多共同特征,但它具有一些独特的特性,包括从五个启动子转录。这两个基因都经历了亲本印迹,/主要从父本染色体表达,相邻的基因从母本染色体表达。与出生后表达下降的小鼠 IGF2 不同,人类 IGF2 在整个生命周期中都保持活跃。这种特性归因于一个独特的人类基因启动子,它逃避印迹,但如这里所示,它涉及几个具有不同组织特异性表达模式的不同启动子。由于新的可测试假设可能会导致对 IGF2 在人类生理学和疾病中的作用的关键见解,因此我们的基本理解必须是准确的。影响其他人类基因知识的类似挑战应促使人们尝试批判性地评估、解释和纠正公共可用数据库中的人类遗传数据。

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