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非哺乳动物脊椎动物中的胰岛素样生长因子 2 基因和基因座:组织简单,鱼类存在复制但分化有限。

The insulin-like growth factor 2 gene and locus in nonmammalian vertebrates: Organizational simplicity with duplication but limited divergence in fish.

机构信息

From the Department of Biomedical Sciences, Paul L. Foster School of Medicine, Texas Tech Health University Health Sciences Center, El Paso, Texas 79905

出版信息

J Biol Chem. 2018 Oct 12;293(41):15912-15932. doi: 10.1074/jbc.RA118.004861. Epub 2018 Aug 28.

DOI:10.1074/jbc.RA118.004861
PMID:30154247
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6187628/
Abstract

The small, secreted peptide, insulin-like growth factor 2 (IGF2), is essential for fetal and prenatal growth in humans and other mammals. Human and mouse genes are located within a conserved linkage group and are regulated by parental imprinting, with / being expressed from the paternally derived chromosome, and from the maternal chromosome. Here, data retrieved from genomic and gene expression repositories were used to examine the gene and locus in 8 terrestrial vertebrates, 11 ray-finned fish, and 1 lobe-finned fish representing >500 million years of evolutionary diversification. The analysis revealed that vertebrate genes are simpler than their mammalian counterparts, having fewer exons and lacking multiple gene promoters. genes are conserved among these species, especially in protein-coding regions, and IGF2 proteins also are conserved, although less so in fish than in terrestrial vertebrates. The locus in terrestrial vertebrates shares additional genes with its mammalian counterparts, including tyrosine hydroxylase (), insulin (), mitochondrial ribosomal protein L23 (), and troponin T3, fast skeletal type (), and both and are present in the locus in fish. Taken together, these observations support the idea that a recognizable was present in the earliest vertebrate ancestors, but that other features developed and diversified in the gene and locus with speciation, especially in mammals. This study also highlights the need for correcting inaccuracies in genome databases to maximize our ability to accurately assess contributions of individual genes and multigene families toward evolution, physiology, and disease.

摘要

小分泌肽胰岛素样生长因子 2(IGF2)是人类和其他哺乳动物胎儿和产前生长所必需的。人和鼠基因位于保守连锁群内,并受亲本印迹调控,/从父本衍生的染色体表达,而从母本染色体表达。在这里,从基因组和基因表达存储库中检索的数据用于检查 8 种陆生脊椎动物、11 种射线鳍鱼类和 1 种 lobe-finned 鱼类中的基因和基因座,这些鱼类代表了超过 5 亿年的进化多样化。分析表明,脊椎动物基因比其哺乳动物对应物更简单,具有更少的外显子,并且缺乏多个基因启动子。基因在这些物种中是保守的,尤其是在蛋白质编码区域,IGF2 蛋白也是保守的,尽管在鱼类中不如在陆生脊椎动物中保守。在陆生脊椎动物中,基因座与哺乳动物对应物共享其他基因,包括酪氨酸羟化酶()、胰岛素()、线粒体核糖体蛋白 L23()和肌钙蛋白 T3,快速骨骼肌型(),并且在鱼类中,和 都存在于基因座中。总之,这些观察结果支持这样一种观点,即在最早的脊椎动物祖先中存在可识别的,但其他特征在基因和基因座中随着物种形成而发展和多样化,尤其是在哺乳动物中。本研究还强调需要纠正基因组数据库中的不准确之处,以最大限度地提高我们准确评估单个基因和多基因家族对进化、生理学和疾病的贡献的能力。

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The insulin-like growth factor 2 gene and locus in nonmammalian vertebrates: Organizational simplicity with duplication but limited divergence in fish.非哺乳动物脊椎动物中的胰岛素样生长因子 2 基因和基因座:组织简单,鱼类存在复制但分化有限。
J Biol Chem. 2018 Oct 12;293(41):15912-15932. doi: 10.1074/jbc.RA118.004861. Epub 2018 Aug 28.
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本文引用的文献

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Insulinlike Growth Factor 1 Gene Variation in Vertebrates.脊椎动物胰岛素样生长因子 1 基因变异。
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Similarity and variation in the insulin-like growth factor 2 - H19 locus in primates.灵长类动物胰岛素样生长因子 2-H19 基因座的相似性和变异性。
Physiol Genomics. 2018 Jun 1;50(6):425-439. doi: 10.1152/physiolgenomics.00030.2018. Epub 2018 Mar 30.
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The complex genetics of human insulin-like growth factor 2 are not reflected in public databases.人类胰岛素样生长因子 2 的复杂遗传结构并未反映在公共数据库中。
J Biol Chem. 2018 Mar 23;293(12):4324-4333. doi: 10.1074/jbc.RA117.001573. Epub 2018 Feb 2.
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Diversification of the insulin-like growth factor 1 gene in mammals.胰岛素样生长因子 1 基因在哺乳动物中的多样化。
PLoS One. 2017 Dec 14;12(12):e0189642. doi: 10.1371/journal.pone.0189642. eCollection 2017.
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