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2
Natural Infection of Cashew (Anacardium occidentale) by Xanthomonas citri pv. mangiferaeindicae in Burkina Faso.布基纳法索中,柑橘黄龙病菌芒果致病变种对腰果(槚如树)的自然侵染
Plant Dis. 2016 Apr;100(4):718-723. doi: 10.1094/PDIS-10-15-1137-RE. Epub 2016 Feb 22.
3
QUAST: quality assessment tool for genome assemblies.QUAST:基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
4
Genome sequence of Xanthomonas citri pv. mangiferaeindicae strain LMG 941.柑橘溃疡病菌 LMG941 基因组序列
J Bacteriol. 2012 Jun;194(11):3031. doi: 10.1128/JB.00433-12.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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6
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7
Pathological Variations Within Xanthomonas campestris pv. mangiferaeindicae Support Its Separation Into Three Distinct Pathovars that Can Be Distinguished by Amplified Fragment Length Polymorphism.黄单胞菌芒果致病变种内的病理性变异支持将其分为三个不同的致病变种,这些致病变种可以通过扩增片段长度多态性来区分。
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8
The RAST Server: rapid annotations using subsystems technology.RAST服务器:使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
9
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.GeneMarkS:一种用于预测微生物基因组中基因起始位点的自训练方法。对在调控区域中寻找序列基序的启示。
Nucleic Acids Res. 2001 Jun 15;29(12):2607-18. doi: 10.1093/nar/29.12.2607.

来自巴西的巴西副球孢子菌菌株IBSBF2579的全基因组序列。

Complete Genome Sequence of pv. Strain IBSBF2579 from Brazil.

作者信息

Silva Junior Wilson José, Farias Antonio Roberto Gomes, Lima Nelson Bernardi, Benko-Iseppon Ana Maria, Aburjaile Flávia, Balbino Valdir Queiroz, Falcão Raul Maia, Leitão Paiva Júnior Sérgio de Sa, Sousa-Paula Lucas Christian, Mariano Rosa Lima Ramos, Souza Elineide Barbosa, Gama Marco Aurélio Siqueira

机构信息

Department of Agronomy, Federal Rural University of Pernambuco, Recife, Brazil.

Department of Genetics, Federal University of Pernambuco, Recife, Brazil.

出版信息

Genome Announc. 2018 Feb 1;6(5):e01574-17. doi: 10.1128/genomeA.01574-17.

DOI:10.1128/genomeA.01574-17
PMID:29437111
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5794958/
Abstract

The bacterium pv. is the agent of angular leaf spot of the cashew tree ( L.). The complete genome sequencing of the strain IBSBF2579 was done on an Illumina HiSeq 2500 platform. The assembly of the pv. strain IBSBF2579 genome yielded 133 contigs, with a size of 5,329,247 bp and a G+C content of 64.03%. The prediction was performed by GeneMarkS and the automatic annotation by Rapid Annotations using Subsystems Technology (RAST), with 4,406 identified genes.

摘要

pv. 细菌是腰果(L.)角斑病的病原体。菌株IBSBF2579的全基因组测序在Illumina HiSeq 2500平台上完成。pv. 菌株IBSBF2579基因组的组装产生了133个重叠群,大小为5,329,247 bp,G+C含量为64.03%。预测由GeneMarkS进行,自动注释由使用子系统技术的快速注释(RAST)完成,共鉴定出4,406个基因。