从人类肺部分离出的12株菌株的基因组序列
Genome Sequences of 12 Strains Isolated from the Lungs of Humans.
作者信息
Scales Brittan S, Erb-Downward John R, Falkowski Nicole R, LiPuma John J, Huffnagle Gary B
机构信息
Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
出版信息
Genome Announc. 2018 Feb 15;6(7):e01461-17. doi: 10.1128/genomeA.01461-17.
Abstract
We report here the first complete genome sequence of a human isolate, strain AU1044, and the draft genomes of 11 other clinical strains, isolated from the lungs of cystic fibrosis patients. The genome of strain AU1044 is 4.81 Mb and encodes seven 16S rRNAs.
摘要
我们在此报告了从囊性纤维化患者肺部分离出的人类菌株AU1044的首个完整基因组序列，以及其他11个临床菌株的基因组草图。菌株AU1044的基因组为4.81 Mb，编码7个16S rRNA。
相似文献
1
Genome Sequences of 12 Strains Isolated from the Lungs of Humans.从人类肺部分离出的12株菌株的基因组序列
Genome Announc. 2018 Feb 15;6(7):e01461-17. doi: 10.1128/genomeA.01461-17.
2
Complete Genome Sequences of Pseudomonas lundensis Strains M101 and M105, Isolated from 1% Pasteurized Milk.从1%巴氏杀菌乳中分离出的伦登斯假单胞菌菌株M101和M105的全基因组序列
Microbiol Resour Announc. 2021 Oct 21;10(42):e0071121. doi: 10.1128/MRA.00711-21.
3
Draft Genome Sequences of Seven Pseudomonas fluorescens Subclade III Strains Isolated from Cystic Fibrosis Patients.从囊性纤维化患者中分离出的七株荧光假单胞菌亚群III菌株的基因组序列草图
Genome Announc. 2015 Jan 29;3(1):e01285-14. doi: 10.1128/genomeA.01285-14.
4
Species of Pseudomonas obtained at 7 degrees C and 30 degrees C during aerobic storage of lamb carcasses.在羊肉胴体有氧储存期间于7摄氏度和30摄氏度下获得的假单胞菌属菌种。
J Appl Bacteriol. 1992 Oct;73(4):317-23. doi: 10.1111/j.1365-2672.1992.tb04983.x.
5
sp. nov. isolated from refrigerated dry-aged beef.从冷藏干制牛肉中分离得到的新种。
Int J Syst Evol Microbiol. 2021 Jun;71(6). doi: 10.1099/ijsem.0.004822.
6
Draft Genome Sequence of Strain KMS 55, an Endophytic Diazotroph Isolated from Rice Roots.从水稻根部分离的内生固氮菌KMS 55菌株的基因组草图序列
Genome Announc. 2017 Oct 5;5(40):e00972-17. doi: 10.1128/genomeA.00972-17.
7
Draft Genome Sequences of Nine Strains of Brochothrix thermosphacta, Carnobacterium divergens, Lactobacillus algidus, Lactobacillus fuchuensis, Lactococcus piscium, Leuconostoc gelidum subsp. gasicomitatum, Pseudomonas lundensis, and Weissella viridescens, a Collection of Psychrotrophic Species Involved in Meat and Seafood Spoilage.嗜热栖热放线菌、分歧肉杆菌、嗜冷乳杆菌、福岛乳杆菌、鱼乳球菌、嗜冷明串珠菌产气亚种、伦登假单胞菌和绿色魏斯氏菌九株菌株的基因组序列草图，一组与肉类和海鲜腐败有关的嗜冷菌。
Genome Announc. 2018 Jun 14;6(24):e00479-18. doi: 10.1128/genomeA.00479-18.
8
Unexpected diversity in the mobilome of a Pseudomonas aeruginosa strain isolated from a dental unit waterline revealed by SMRT Sequencing.通过单分子实时测序揭示从牙科治疗机供水管线分离的铜绿假单胞菌菌株移动元件的意外多样性。
Genome. 2018 May;61(5):359-365. doi: 10.1139/gen-2017-0239. Epub 2018 Mar 16.
9
Metabolomics reveals spoilage characteristics and interaction of Pseudomonas lundensis and Brochothrix thermosphacta in refrigerated beef.代谢组学揭示了假单胞菌和热死环丝菌在冷藏牛肉中的腐败特征及其相互作用。
Food Res Int. 2022 Jun;156:111139. doi: 10.1016/j.foodres.2022.111139. Epub 2022 Mar 15.
10
Regulation of pyrimidine formation in Pseudomonas lundensis.伦登斯假单胞菌中嘧啶合成的调控
Can J Microbiol. 2009 Mar;55(3):261-8. doi: 10.1139/w08-137.
引用本文的文献
1
The Microbiology of Non- Isolated From Adults With Cystic Fibrosis: Criteria to Help Determine the Clinical Significance of Non- in CF Lung Pathology.非分离培养的微生物在成人囊性纤维化中的作用：帮助确定 CF 肺部病变中微生物的临床意义的标准。
Br J Biomed Sci. 2022 Jun 8;79:10468. doi: 10.3389/bjbs.2022.10468. eCollection 2022.
2
Pseudomonas species prevalence, protein analysis, and antibiotic resistance: an evolving public health challenge.假单胞菌属菌种的流行情况、蛋白质分析及抗生素耐药性：一个不断演变的公共卫生挑战。
AMB Express. 2022 May 9;12(1):53. doi: 10.1186/s13568-022-01390-1.
3
Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic diversity.宏基因组学研究揭示马粪便微生物组具有广泛的分类多样性。
PeerJ. 2022 Mar 23;10:e13084. doi: 10.7717/peerj.13084. eCollection 2022.
4
The Psychrotrophic Pseudomonas lundensis, a Non- Pseudomonad, Has a Type III Secretion System of the Ysc Family, Which Is Transcriptionally Active at 37°C.低温栖假单胞菌，一种非假单胞菌，具有 Ysc 家族的 III 型分泌系统，在 37°C 时转录活跃。
mBio. 2022 Feb 22;13(1):e0386921. doi: 10.1128/mbio.03869-21.
5
Complete Genome Sequences of Pseudomonas lundensis Strains M101 and M105, Isolated from 1% Pasteurized Milk.从1%巴氏杀菌乳中分离出的伦登斯假单胞菌菌株M101和M105的全基因组序列
Microbiol Resour Announc. 2021 Oct 21;10(42):e0071121. doi: 10.1128/MRA.00711-21.
6
Lower Respiratory Tract Microbiome and Resistome of Bovine Respiratory Disease Mortalities.牛呼吸道疾病死亡病例的下呼吸道微生物组和耐药组。
Microb Ecol. 2019 Aug;78(2):446-456. doi: 10.1007/s00248-019-01361-3. Epub 2019 Mar 27.
本文引用的文献
1
Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.荧光假单胞菌复合体中的基因组和遗传多样性。
PLoS One. 2016 Feb 25;11(2):e0150183. doi: 10.1371/journal.pone.0150183. eCollection 2016.
2
Draft Genome Sequences of Seven Pseudomonas fluorescens Subclade III Strains Isolated from Cystic Fibrosis Patients.从囊性纤维化患者中分离出的七株荧光假单胞菌亚群III菌株的基因组序列草图
Genome Announc. 2015 Jan 29;3(1):e01285-14. doi: 10.1128/genomeA.01285-14.
3
Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.荧光假单胞菌物种复合体的微生物学、基因组学及临床意义，一种未被充分认识的人类定植菌。
Clin Microbiol Rev. 2014 Oct;27(4):927-48. doi: 10.1128/CMR.00044-14.
4
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7：性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
5
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.植物相关假单胞菌的比较基因组学：多营养相互作用相关性状多样性和遗传的研究。
PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.
6
DNA sequence-based analysis of the Pseudomonas species.基于 DNA 序列的假单胞菌属分析。
Environ Microbiol. 2010 Jun;12(6):1513-30. doi: 10.1111/j.1462-2920.2010.02181.x. Epub 2010 Feb 25.
7
Reordering contigs of draft genomes using the Mauve aligner.使用 Mauve 比对工具重新排列草图基因组的顺序。
Bioinformatics. 2009 Aug 15;25(16):2071-3. doi: 10.1093/bioinformatics/btp356. Epub 2009 Jun 10.
8
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.MAFFT：一种基于快速傅里叶变换的快速多序列比对新方法。
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. doi: 10.1093/nar/gkf436.
9
Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA.利用聚合酶链反应扩增的16S rRNA特异性DNA对趋磁水生螺菌进行系统发育分析。
Int J Syst Bacteriol. 1991 Apr;41(2):324-5. doi: 10.1099/00207713-41-2-324.
Zotero 插件