School of Earth Sciences, University of Bristol, Bristol BS8 1TQ, United Kingdom.
Department of Earth Sciences, Natural History Museum, London SW7 5BD, United Kingdom.
Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2274-E2283. doi: 10.1073/pnas.1719588115. Epub 2018 Feb 20.
Establishing the timescale of early land plant evolution is essential for testing hypotheses on the coevolution of land plants and Earth's System. The sparseness of early land plant megafossils and stratigraphic controls on their distribution make the fossil record an unreliable guide, leaving only the molecular clock. However, the application of molecular clock methodology is challenged by the current impasse in attempts to resolve the evolutionary relationships among the living bryophytes and tracheophytes. Here, we establish a timescale for early land plant evolution that integrates over topological uncertainty by exploring the impact of competing hypotheses on bryophyte-tracheophyte relationships, among other variables, on divergence time estimation. We codify 37 fossil calibrations for Viridiplantae following best practice. We apply these calibrations in a Bayesian relaxed molecular clock analysis of a phylogenomic dataset encompassing the diversity of Embryophyta and their relatives within Viridiplantae. Topology and dataset sizes have little impact on age estimates, with greater differences among alternative clock models and calibration strategies. For all analyses, a Cambrian origin of Embryophyta is recovered with highest probability. The estimated ages for crown tracheophytes range from Late Ordovician to late Silurian. This timescale implies an early establishment of terrestrial ecosystems by land plants that is in close accord with recent estimates for the origin of terrestrial animal lineages. Biogeochemical models that are constrained by the fossil record of early land plants, or attempt to explain their impact, must consider the implications of a much earlier, middle Cambrian-Early Ordovician, origin.
建立早期陆地植物进化的时间尺度对于测试陆地植物与地球系统的协同进化假说至关重要。早期陆地植物大化石的稀疏性和它们分布的地层控制,使得化石记录成为不可靠的指南,只剩下分子钟。然而,分子钟方法的应用受到当前解决现存苔藓植物和维管植物之间进化关系僵局的挑战。在这里,我们通过探索竞争假说对苔藓植物-维管植物关系的影响,以及其他变量对分歧时间估计的影响,建立了一个整合拓扑不确定性的早期陆地植物进化时间尺度。我们遵循最佳实践,为 Viridiplantae 编码了 37 个化石校准点。我们将这些校准点应用于一个基于系统发育基因组数据集的贝叶斯放松分子钟分析中,该数据集包括了 Embryophyta 的多样性及其在 Viridiplantae 中的亲缘关系。拓扑结构和数据集大小对年龄估计的影响很小,不同的时钟模型和校准策略之间的差异更大。对于所有分析,最有可能的结果是冠维管束植物起源于寒武纪。冠维管束植物的估计年龄范围从奥陶纪晚期到志留纪晚期。这个时间尺度意味着陆地植物很早就建立了陆地生态系统,这与最近对陆地动物谱系起源的估计密切一致。受早期陆地植物化石记录约束的生物地球化学模型,或试图解释它们的影响,必须考虑到更早期的中寒武纪-早奥陶纪起源的影响。