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基于结构的虚拟筛选研究以鉴定GPR142的新型潜在化合物及其用于2型糖尿病研究的相关动力学分析

Structure Based Virtual Screening Studies to Identify Novel Potential Compounds for GPR142 and Their Relative Dynamic Analysis for Study of Type 2 Diabetes.

作者信息

Kaushik Aman C, Kumar Sanjay, Wei Dong Q, Sahi Shakti

机构信息

State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.

School of Biotechnology, Gautam Buddha University, Greater Noida, India.

出版信息

Front Chem. 2018 Feb 14;6:23. doi: 10.3389/fchem.2018.00023. eCollection 2018.

Abstract

GPR142 (G protein receptor 142) is a novel orphan GPCR (G protein coupled receptor) belonging to "Class A" of GPCR family and expressed in β cells of pancreas. In this study, we reported the structure based virtual screening to identify the hit compounds which can be developed as leads for potential agonists. The results were validated through induced fit docking, pharmacophore modeling, and system biology approaches. Since, there is no solved crystal structure of GPR142, we attempted to predict the 3D structure followed by validation and then identification of active site using threading and methods. Also, structure based virtual screening was performed against a total of 1171519 compounds from different libraries and only top 20 best hit compounds were screened and analyzed. Moreover, the biochemical pathway of GPR142 complex with screened compound2 was also designed and compared with experimental data. Interestingly, compound2 showed an increase in insulin production via Gq mediated signaling pathway suggesting the possible role of novel GPR142 agonists in therapy against type 2 diabetes.

摘要

GPR142(G蛋白受体142)是一种新型孤儿G蛋白偶联受体(GPCR),属于GPCR家族的“A类”,在胰腺β细胞中表达。在本研究中,我们报告了基于结构的虚拟筛选,以鉴定可开发为潜在激动剂先导物的命中化合物。通过诱导契合对接、药效团建模和系统生物学方法对结果进行了验证。由于GPR142没有已解析的晶体结构,我们尝试通过穿线法和其他方法预测其三维结构,随后进行验证,然后识别活性位点。此外,针对来自不同库的总共1171519种化合物进行了基于结构的虚拟筛选,仅筛选并分析了排名前20的最佳命中化合物。此外,还设计了GPR142与筛选出的化合物2的复合物的生化途径,并与实验数据进行了比较。有趣的是,化合物2通过Gq介导的信号通路显示胰岛素产量增加,表明新型GPR142激动剂在2型糖尿病治疗中可能发挥的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e5c/5817085/803bece00254/fchem-06-00023-g0001.jpg

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