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使用带指数调整的发病率衰减模型实时预测季节性流感

Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model.

作者信息

Nasserie Tahmina, Tuite Ashleigh R, Whitmore Lindsay, Hatchette Todd, Drews Steven J, Peci Adriana, Kwong Jeffrey C, Friedman Dara, Garber Gary, Gubbay Jonathan, Fisman David N

机构信息

Li Ka Shing Knowledge Institute, St. Michael's Hospital, Toronto, Ontario, Canada.

Division of Epidemiology, Dalla Lana School of Public Health, and.

出版信息

Open Forum Infect Dis. 2017 Sep 27;4(3):ofx166. doi: 10.1093/ofid/ofx166. eCollection 2017 Summer.

Abstract

BACKGROUND

Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging.

METHODS

We used the previously described "incidence decay with exponential adjustment" (IDEA) model, a 2-parameter phenomenological model, to evaluate the characteristics of the 2015-2016 influenza season in 4 Canadian jurisdictions: the Provinces of Alberta, Nova Scotia and Ontario, and the City of Ottawa. Model fits were updated weekly with receipt of incident virologically confirmed case counts. Best-fit models were used to project seasonal influenza peaks and epidemic final sizes.

RESULTS

The 2015-2016 influenza season was mild and late-peaking. Parameter estimates generated through fitting were consistent in the 2 largest jurisdictions (Ontario and Alberta) and with pooled data including Nova Scotia counts (R approximately 1.4 for all fits). Lower R estimates were generated in Nova Scotia and Ottawa. Final size projections that made use of complete time series were accurate to within 6% of true final sizes, but final size was using pre-peak data. Projections of epidemic peaks stabilized before the true epidemic peak, but these were persistently early (~2 weeks) relative to the true peak.

CONCLUSIONS

A simple, 2-parameter influenza model provided reasonably accurate real-time projections of influenza seasonal dynamics in an atypically late, mild influenza season. Challenges are similar to those seen with more complex forecasting methodologies. Future work includes identification of seasonal characteristics associated with variability in model performance.

摘要

背景

季节性流感疫情频繁发生。对季节性动态进行快速特征描述以及预测疫情高峰和最终规模有助于支持与疫苗接种及其他防控措施相关的实时决策。实时预测仍然具有挑战性。

方法

我们使用先前描述的“指数调整发病率衰减”(IDEA)模型,这是一个双参数现象学模型,来评估加拿大4个司法管辖区2015 - 2016年流感季节的特征:艾伯塔省、新斯科舍省和安大略省以及渥太华市。随着收到病毒学确诊病例数,每周更新模型拟合。使用最佳拟合模型预测季节性流感高峰和疫情最终规模。

结果

2015 - 2016年流感季节较为温和且高峰出现较晚。通过拟合生成的参数估计在两个最大的司法管辖区(安大略省和艾伯塔省)以及包括新斯科舍省病例数的汇总数据中是一致的(所有拟合的R约为1.4)。新斯科舍省和渥太华的R估计值较低。利用完整时间序列进行的最终规模预测与真实最终规模的误差在6%以内,但最终规模是使用高峰前的数据。疫情高峰的预测在真实疫情高峰之前趋于稳定,但相对于真实高峰而言,这些预测一直提前(约2周)。

结论

一个简单的双参数流感模型在一个非典型晚发、温和的流感季节中对流感季节性动态提供了合理准确的实时预测。挑战与更复杂的预测方法所面临的挑战类似。未来的工作包括确定与模型性能变异性相关的季节性特征。

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