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原位质谱揭示M2型丙酮酸激酶与1,6-二磷酸果糖的变构结合机制。

Native Mass Spectrometry Gives Insight into the Allosteric Binding Mechanism of M2 Pyruvate Kinase to Fructose-1,6-Bisphosphate.

作者信息

Gavriilidou Agni F M, Holding Finn P, Mayer Daniel, Coyle Joseph E, Veprintsev Dmitry B, Zenobi Renato

机构信息

ETH Zurich , Department of Chemistry and Applied Biosciences , CH-8093 Zurich , Switzerland.

Astex Pharmaceuticals , 436 Cambridge Science Park, Milton Road , Cambridge CB4 0QA , United Kingdom.

出版信息

Biochemistry. 2018 Mar 20;57(11):1685-1689. doi: 10.1021/acs.biochem.7b01270. Epub 2018 Mar 8.

DOI:10.1021/acs.biochem.7b01270
PMID:29499117
Abstract

The various oligomeric states of the M2 isoform of pyruvate kinase (PKM2) were distinguished using native mass spectrometry. The effect of PKM2 concentration on its dimer-tetramer equilibrium was monitored, and a value for the dissociation constant ( K) of the two species was estimated to be 0.95 μM. Results of binding of fructose-1,6-bisphosphate (FBP) to PKM2 are shown and provide insight into the allosteric mechanism and changes in the oligomerization status of PKM2. The average K for binding of FBP to the PKM2 tetramer was estimated to be 7.5 μM. It is concluded that four molecules of FBP bind to the active PKM2 tetramer whereas binding of FBP to the PKM2 dimer was not observed. It is suggested that either FBP potentiates rapid tetramer formation after binding to apo PKM2 dimers or FBP binds to PKM2 apo tetramers, thus driving the dimer-tetramer equilibrium in the direction of fully FBP-bound tetramer. The binding occurs in a highly positively cooperative manner with a Hill coefficient ( n) of 3.

摘要

利用基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)区分丙酮酸激酶M2亚型(PKM2)的各种寡聚状态。监测了PKM2浓度对其二聚体-四聚体平衡的影响,估计这两种状态的解离常数(K)值为0.95μM。展示了果糖-1,6-二磷酸(FBP)与PKM2结合的结果,这些结果为PKM2的变构机制及寡聚化状态变化提供了深入了解。FBP与PKM2四聚体结合的平均K值估计为7.5μM。得出的结论是,四个FBP分子与活性PKM2四聚体结合,而未观察到FBP与PKM2二聚体的结合。研究表明,要么FBP在与无辅基PKM2二聚体结合后促进快速形成四聚体,要么FBP与PKM2无辅基四聚体结合,从而将二聚体-四聚体平衡朝着完全结合FBP的四聚体方向推动。这种结合以高度正协同的方式发生,希尔系数(n)为3。

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