Lan Wei, Huang Liyu, Lai Dehuan, Chen Qingfeng
School of Computer, Electronics and Information, Guangxi University, Nanning, China.
Information and Network Center, Guangxi University, Nanning, China.
Methods Mol Biol. 2018;1754:205-221. doi: 10.1007/978-1-4939-7717-8_12.
With the development and improvement of next-generation sequencing technology, a great number of noncoding RNAs have been discovered. Long noncoding RNAs (lncRNAs) are the biggest kind of noncoding RNAs with more than 200 nt nucleotides in length. There are increasing evidences showing that lncRNAs play key roles in many biological processes. Therefore, the mutation and dysregulation of lncRNAs have close association with a number of complex human diseases. Identifying the most likely interaction between lncRNAs and diseases becomes a fundamental challenge in human health. A common view is that lncRNAs with similar function tend to be related to phenotypic similar diseases. In this chapter, we firstly introduce the concept of lncRNA, their biological features, and available data resources. Further, the recent computational approaches are explored to identify interactions between long noncoding RNAs and diseases, including their advantages and disadvantages. The key issues and potential future works of predicting interactions between long noncoding RNAs and diseases are also discussed.
随着下一代测序技术的发展与完善,大量非编码RNA被发现。长链非编码RNA(lncRNAs)是最大一类非编码RNA,长度超过200个核苷酸。越来越多的证据表明lncRNAs在许多生物学过程中发挥关键作用。因此,lncRNAs的突变和失调与许多复杂的人类疾病密切相关。确定lncRNAs与疾病之间最可能的相互作用成为人类健康领域的一项基本挑战。一种普遍观点是,具有相似功能的lncRNAs往往与表型相似的疾病相关。在本章中,我们首先介绍lncRNA的概念、其生物学特征以及可用的数据资源。此外,还探讨了最近用于识别长链非编码RNA与疾病之间相互作用的计算方法,包括它们的优缺点。还讨论了预测长链非编码RNA与疾病之间相互作用的关键问题和潜在的未来工作。