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基于本体的无动物发育神经毒性测试策略的设计与验证。

Design and validation of an ontology-driven animal-free testing strategy for developmental neurotoxicity testing.

机构信息

Center for Health Protection, National Institute for Public Health and The Environment (RIVM), P.O. Box 1, 3720BA Bilthoven, The Netherlands.

Center for Health Protection, National Institute for Public Health and The Environment (RIVM), P.O. Box 1, 3720BA Bilthoven, The Netherlands.

出版信息

Toxicol Appl Pharmacol. 2018 Sep 1;354:136-152. doi: 10.1016/j.taap.2018.03.013. Epub 2018 Mar 13.

Abstract

Developmental neurotoxicity entails one of the most complex areas in toxicology. Animal studies provide only limited information as to human relevance. A multitude of alternative models have been developed over the years, providing insights into mechanisms of action. We give an overview of fundamental processes in neural tube formation, brain development and neural specification, aiming at illustrating complexity rather than comprehensiveness. We also give a flavor of the wealth of alternative methods in this area. Given the impressive progress in mechanistic knowledge of human biology and toxicology, the time is right for a conceptual approach for designing testing strategies that cover the integral mechanistic landscape of developmental neurotoxicity. The ontology approach provides a framework for defining this landscape, upon which an integral in silico model for predicting toxicity can be built. It subsequently directs the selection of in vitro assays for rate-limiting events in the biological network, to feed parameter tuning in the model, leading to prediction of the toxicological outcome. Validation of such models requires primary attention to coverage of the biological domain, rather than classical predictive value of individual tests. Proofs of concept for such an approach are already available. The challenge is in mining modern biology, toxicology and chemical information to feed intelligent designs, which will define testing strategies for neurodevelopmental toxicity testing.

摘要

发育神经毒性涉及毒理学中最复杂的领域之一。动物研究对于人类相关性仅提供了有限的信息。多年来已经开发出了多种替代模型,为作用机制提供了深入的了解。我们概述了神经管形成、大脑发育和神经特化的基本过程,旨在说明复杂性而不是全面性。我们还介绍了该领域丰富的替代方法。鉴于人类生物学和毒理学在机制知识方面取得的令人印象深刻的进展,现在正是为设计测试策略的概念方法提供一个涵盖发育神经毒性整体机制景观的时机。本体论方法为定义这个景观提供了一个框架,可以在此基础上构建一个用于预测毒性的整体计算机模型。它随后指导选择用于生物网络中限速事件的体外测定,以在模型中进行参数调整,从而预测毒性结果。此类模型的验证需要特别注意生物领域的涵盖范围,而不是单个测试的经典预测值。这种方法的概念验证已经存在。挑战在于挖掘现代生物学、毒理学和化学信息,以提供智能设计,从而为神经发育毒性测试定义测试策略。

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