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从原代雪旺细胞中纯化外泌体、RNA提取及外泌体RNA的下一代测序

Purification of Exosomes from Primary Schwann Cells, RNA Extraction, and Next-Generation Sequencing of Exosomal RNAs.

作者信息

De Gregorio Cristian, Díaz Paula, López-Leal Rodrigo, Manque Patricio, Court Felipe A

机构信息

Center for Integrative Biology, Faculty of Sciences, Universidad Mayor, Santiago, Chile.

FONDAP Center for Geroscience, Brain Health and Metabolism, Santiago, Chile.

出版信息

Methods Mol Biol. 2018;1739:299-315. doi: 10.1007/978-1-4939-7649-2_19.

Abstract

Exosomes are small (30-150 nm) vesicles of endosomal origin secreted by most cell types. Exosomes contain proteins, lipids, and RNA species including microRNA, mRNA, rRNA, and long noncoding RNAs. The mechanisms associated with exosome synthesis and cargo loading are still poorly understood. A role for exosomes in intercellular communication has been reported in physiological and pathological conditions both in vitro and in vivo. Previous studies have suggested that Schwann cell-derived exosomes regulate neuronal functions, but the mechanisms are still unclear. Here, we describe protocols to establish rat neonatal Schwann cell cultures and to isolate exosomes from the conditioned medium of these cultures by differential ultracentrifugation. To analyze the RNA content of Schwann cell-derived exosomes, we detail protocols for RNA extraction and next-generation sequencing using miRNA and mRNA libraries. The protocol also includes RNA sequencing of Schwann cells, which allows the comparison between RNA content from cells and the secreted exosomes. Identification of RNAs present in Schwann cell-derived exosomes is a valuable tool to understand novel roles of Schwann cells in neuronal function in health and disease.

摘要

外泌体是大多数细胞类型分泌的源自内体的小囊泡(30 - 150纳米)。外泌体包含蛋白质、脂质和RNA种类,包括微小RNA、信使RNA、核糖体RNA和长链非编码RNA。与外泌体合成和货物装载相关的机制仍知之甚少。外泌体在细胞间通讯中的作用已在体外和体内的生理及病理条件下被报道。先前的研究表明,雪旺细胞衍生的外泌体调节神经元功能,但其机制仍不清楚。在这里,我们描述了建立大鼠新生雪旺细胞培养物以及通过差速超速离心从这些培养物的条件培养基中分离外泌体的方案。为了分析雪旺细胞衍生外泌体的RNA含量,我们详细介绍了使用微小RNA和信使RNA文库进行RNA提取和下一代测序的方案。该方案还包括雪旺细胞的RNA测序,这使得能够比较细胞和分泌的外泌体中的RNA含量。鉴定雪旺细胞衍生外泌体中存在的RNA是了解雪旺细胞在健康和疾病中神经元功能新作用的宝贵工具。

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