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使用直方图距离对临床数据存储库中的数据进行扩散度量映射相似性的表征。

Characterization of Diffusion Metric Map Similarity in Data From a Clinical Data Repository Using Histogram Distances.

作者信息

Warner Graham C, Helmer Karl G

机构信息

Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA, United States.

Department of Radiology, Massachusetts General Hospital, Boston, MA, United States.

出版信息

Front Neurosci. 2018 Mar 8;12:133. doi: 10.3389/fnins.2018.00133. eCollection 2018.

Abstract

As the sharing of data is mandated by funding agencies and journals, reuse of data has become more prevalent. It becomes imperative, therefore, to develop methods to characterize the similarity of data. While users can group data based on the acquisition parameters stored in the file headers, these gives no indication whether a file can be combined with other data without increasing the variance in the data set. Methods have been implemented that characterize the signal-to-noise ratio or identify signal drop-outs in the raw image files, but potential users of data often have access to calculated metric maps and these are more difficult to characterize and compare. Here we describe a histogram-distance-based method applied to diffusion metric maps of fractional anisotropy and mean diffusivity that were generated using data extracted from a repository of clinically-acquired MRI data. We describe the generation of the data set, the pitfalls specific to diffusion MRI data, and the results of the histogram distance analysis. We find that, in general, data from GE scanners are less similar than are data from Siemens scanners. We also find that the distribution of distance metric values is not Gaussian at any selection of the acquisition parameters considered here (field strength, number of gradient directions, -value, and vendor).

摘要

由于资助机构和期刊都要求共享数据,数据的再利用变得更加普遍。因此,开发表征数据相似性的方法变得势在必行。虽然用户可以根据存储在文件头中的采集参数对数据进行分组,但这无法表明一个文件是否可以与其他数据合并而不增加数据集的方差。已经实施了一些方法来表征原始图像文件中的信噪比或识别信号丢失,但数据的潜在用户通常可以访问计算得到的度量图,而这些图更难表征和比较。在这里,我们描述了一种基于直方图距离的方法,该方法应用于分数各向异性和平均扩散率的扩散度量图,这些图是使用从临床采集的MRI数据存储库中提取的数据生成的。我们描述了数据集的生成、扩散MRI数据特有的陷阱以及直方图距离分析的结果。我们发现,一般来说,来自GE扫描仪的数据比来自西门子扫描仪的数据相似度更低。我们还发现,在此处考虑的任何采集参数选择(场强、梯度方向数量、值和供应商)下,距离度量值的分布都不是高斯分布。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f71d/5852401/4bd8e7b91d83/fnins-12-00133-g0001.jpg

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