Department of Ophthalmology and Visual Sciences (MHK, KNM, MW), The University of Iowa, Iowa City, Iowa; Division of Human Genetics (RM), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Department of Biostatistics (BED), The University of Iowa, Iowa City, Iowa; Division of Endocrinology and Diabetes (SEM), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Department of Pediatrics (SEM), Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania; Division of Ophthalmology (GTL), Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; and New York Eye and Ear Infirmary (MJK), Icahn School of Medicine at Mount Sinai, New York, New York.
J Neuroophthalmol. 2019 Mar;39(1):50-55. doi: 10.1097/WNO.0000000000000648.
Idiopathic intracranial hypertension (IIH) is a condition characterized by increased intracranial pressure of unknown cause. IIH has been shown to be associated with female sex as well as obesity. This genome-wide association study was performed to determine whether genetic variants are associated with this condition.
We analyzed the chromosomal DNA of 95 patients with IIH enrolled in the Idiopathic Intracranial Hypertension Treatment Trial and 95 controls matched on sex, body mass index, and self-reported ethnicity. The samples were genotyped using Illumina Infinium HumanCoreExome v1-0 array and analyzed using a generalized linear mixed model that accounted for population stratification using multidimensional scaling.
A total of 301,908 single nucleotide polymorphisms (SNPs) were evaluated. The strongest associations observed were for rs2234671 on chromosome 2 (P = 4.93 × 10), rs79642714 on chromosome 6 (P = 2.12 × 10), and rs200288366 on chromosome 12 (P = 6.23 × 10). In addition, 3 candidate regions marked by multiple associated SNPs were identified on chromosome 5, 13, and 14.
This is the first study to investigate the genetics of IIH in a rigorously characterized cohort. The study was limited by its modest size and thus would have only been able to demonstrate highly significant association on a genome-wide scale for relatively common alleles exerting large effects. However, several variants and loci were identified that might be strong candidates for follow-up studies in other well-phenotyped cohorts.
特发性颅内高压(IIH)是一种以不明原因颅内压升高为特征的疾病。IIH 与女性以及肥胖有关。本全基因组关联研究旨在确定遗传变异是否与这种情况有关。
我们分析了 95 名特发性颅内高压治疗试验中 IIH 患者和 95 名按性别、体重指数和自我报告种族匹配的对照者的染色体 DNA。使用 Illumina Infinium HumanCoreExome v1-0 阵列对样本进行基因分型,并使用多维尺度分析人口分层的广义线性混合模型进行分析。
共评估了 301908 个单核苷酸多态性(SNP)。观察到的最强关联是染色体 2 上的 rs2234671(P=4.93×10)、染色体 6 上的 rs79642714(P=2.12×10)和染色体 12 上的 rs200288366(P=6.23×10)。此外,还在染色体 5、13 和 14 上确定了 3 个由多个相关 SNP 标记的候选区域。
这是第一项在严格特征化队列中研究 IIH 遗传学的研究。该研究受到其规模适中的限制,因此仅能够在相对常见的、效应较大的等位基因在全基因组范围内表现出高度显著关联的情况下进行。然而,已经确定了一些变体和基因座,它们可能是在其他表型良好的队列中进行后续研究的强有力候选者。