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筛选东方粘虫定量实时 PCR 分析的潜在参考基因。

Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata.

机构信息

Institute of Plant Protection, Guizhou Academy of Agricultural Science, Guiyang, China.

出版信息

PLoS One. 2018 Apr 4;13(4):e0195096. doi: 10.1371/journal.pone.0195096. eCollection 2018.

Abstract

The oriental armyworm, Mythimna separata, is a major insect pest in China and other Asian countries. Unfortunately, suitable reference genes for quantitative real-time PCR (qRT-PCR) have not been previously identified in M. separata for normalizing target gene expression. In this study, we evaluated the expression stability of eight candidate genes (18S, ACT, EF1-α, GAPDH, RPS7, RPS13, RPL32 and TUB) in M. separata using the comparative ΔCt method, BestKeeper, Normfinder geNorm and ReFinder, a comprehensive software platform. The results indicated that the appropriate reference gene varied depending on the experimental conditions. We found that ACTIN, EF1-α and TUB were optimal for different developmental stages; TUB, RPS13 and EF1-α showed the most stable expresssion in different tissues; RPS13 and 18S were the best reference genes for monitoring expression under high temperature conditions; TUB, RPS13 and RPS7 exhibited the most stable expression under larval-crowding conditions; RPS7, EF1-α, RPL32 and GAPDH were the best for pesticide exposure experiments. This study provides tools for reliable normalization of qRT-PCR data and forms a foundation for functional studies of target gene expression in M. separata.

摘要

东方粘虫,Mythimna separata,是中国和其他亚洲国家的主要害虫。不幸的是,目前还没有合适的参考基因可以用于定量实时 PCR(qRT-PCR)来归一化 M. separata 中的靶基因表达。在这项研究中,我们使用比较 ΔCt 法、BestKeeper、Normfinder geNorm 和 ReFinder 综合软件平台评估了 8 个候选基因(18S、ACT、EF1-α、GAPDH、RPS7、RPS13、RPL32 和 TUB)在 M. separata 中的表达稳定性。结果表明,合适的参考基因因实验条件而异。我们发现 ACTIN、EF1-α 和 TUB 是不同发育阶段的最佳参考基因;TUB、RPS13 和 EF1-α 在不同组织中表现出最稳定的表达;RPS13 和 18S 是监测高温条件下表达的最佳参考基因;TUB、RPS13 和 RPS7 在幼虫拥挤条件下表现出最稳定的表达;RPS7、EF1-α、RPL32 和 GAPDH 是农药暴露实验的最佳参考基因。本研究为可靠的 qRT-PCR 数据归一化提供了工具,并为 M. separata 中靶基因表达的功能研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e543/5884543/31b94da5bacf/pone.0195096.g001.jpg

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