Department of Embryology, Carnegie Institution for Science, Baltimore, MD, USA.
Department of Biology, Johns Hopkins University, Baltimore, MD, USA.
Epigenetics Chromatin. 2018 Apr 4;11(1):15. doi: 10.1186/s13072-018-0186-0.
Meiosis is a specialized germ cell cycle that generates haploid gametes. In the initial stage of meiosis, meiotic prophase I (MPI), homologous chromosomes pair and recombine. Extensive changes in chromatin in MPI raise an important question concerning the contribution of epigenetic mechanisms such as DNA methylation to meiosis. Interestingly, previous studies concluded that in male mice, genome-wide DNA methylation patters are set in place prior to meiosis and remain constant subsequently. However, no prior studies examined DNA methylation during MPI in a systematic manner necessitating its further investigation.
In this study, we used genome-wide bisulfite sequencing to determine DNA methylation of adult mouse spermatocytes at all MPI substages, spermatogonia and haploid sperm. This analysis uncovered transient reduction of DNA methylation (TRDM) of spermatocyte genomes. The genome-wide scope of TRDM, its onset in the meiotic S phase and presence of hemimethylated DNA in MPI are all consistent with a DNA replication-dependent DNA demethylation. Following DNA replication, spermatocytes regain DNA methylation gradually but unevenly, suggesting that key MPI events occur in the context of hemimethylated genome. TRDM also uncovers the prior deficit of DNA methylation of LINE-1 retrotransposons in spermatogonia resulting in their full demethylation during TRDM and likely contributing to the observed mRNA and protein expression of some LINE-1 elements in early MPI.
Our results suggest that contrary to the prevailing view, chromosomes exhibit dynamic changes in DNA methylation in MPI. We propose that TRDM facilitates meiotic prophase processes and gamete quality control.
减数分裂是一种专门的生殖细胞周期,可产生单倍体配子。在减数分裂的初始阶段,减数分裂前期 I(MPI),同源染色体配对和重组。MPI 中染色质的广泛变化提出了一个重要问题,即表观遗传机制(如 DNA 甲基化)对减数分裂的贡献。有趣的是,先前的研究得出结论,在雄性小鼠中,全基因组 DNA 甲基化模式在减数分裂前建立,并随后保持不变。然而,以前的研究没有系统地检查 MPI 期间的 DNA 甲基化,因此需要进一步研究。
在这项研究中,我们使用全基因组亚硫酸氢盐测序来确定成年小鼠精母细胞在所有 MPI 亚阶段、精原细胞和单倍体精子中的 DNA 甲基化。这种分析揭示了精母细胞基因组 DNA 甲基化的瞬时减少(TRDM)。TRDM 的全基因组范围、在减数分裂 S 期开始以及 MPI 中存在半甲基化 DNA,都与 DNA 复制依赖性 DNA 去甲基化一致。DNA 复制后,精母细胞逐渐但不均匀地恢复 DNA 甲基化,这表明关键的 MPI 事件发生在半甲基化基因组的背景下。TRDM 还揭示了 LINE-1 反转录转座子在精原细胞中先前的 DNA 甲基化不足,导致其在 TRDM 期间完全去甲基化,并可能导致早期 MPI 中一些 LINE-1 元件的 mRNA 和蛋白质表达。
我们的结果表明,与流行观点相反,染色体在 MPI 中表现出 DNA 甲基化的动态变化。我们提出,TRDM 促进了减数分裂前期过程和配子质量控制。