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预混液对通过定量聚合酶链反应测量端粒长度的影响。

Effect of master mixes on the measurement of telomere length by qPCR.

作者信息

Jiménez Karen M, Forero Diego A

机构信息

Laboratory of NeuroPsychiatric Genetics, Biomedical Sciences Research Group, School of Medicine, Universidad Antonio Nariño, Bogotá, 110231, Colombia.

出版信息

Mol Biol Rep. 2018 Aug;45(4):633-638. doi: 10.1007/s11033-018-4175-y. Epub 2018 Apr 5.

DOI:10.1007/s11033-018-4175-y
PMID:29623565
Abstract

Alterations in telomere length (TL) have been associated with several diseases and a method based on qPCR, the Monochrome Multiplex Real-Time Quantitative PCR (MMQPCR) technique, has been used extensively for the analysis of TL. Some previous studies have been found that certain methodological conditions can affect the measurement of TL. The aim of the study was to evaluate the performance of eight different commercially available SYBR Green and High-Resolution Melting (HRM) mixes on the measurement of TL by the MMQPCR method. Four SYBR Green and four HRM mixes were tested and the measurement of TL was expressed by the T/S ratio. It was found that the type of master mix used in MMQPCR influences the measurement of TL, affecting aspects such as the specificity and consistency of the results. Our results are the first description of the effects of different master mixes on TL analysis by MMQPCR and highlight the importance of the future methodological improvement of this broadly used technique.

摘要

端粒长度(TL)的改变与多种疾病相关,一种基于定量聚合酶链反应(qPCR)的方法,即单色多重实时定量PCR(MMQPCR)技术,已被广泛用于TL分析。先前的一些研究发现,某些方法学条件会影响TL的测量。本研究的目的是评估八种不同的市售SYBR Green和高分辨率熔解(HRM)混合试剂在通过MMQPCR方法测量TL方面的性能。测试了四种SYBR Green和四种HRM混合试剂,TL的测量用T/S比值表示。结果发现,MMQPCR中使用的预混试剂类型会影响TL的测量,影响结果的特异性和一致性等方面。我们的结果首次描述了不同预混试剂对MMQPCR分析TL的影响,并突出了未来改进这种广泛应用技术的方法学的重要性。

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Comparing qPCR and DNA methylation-based measurements of telomere length in a high-risk pediatric cohort.比较高危儿科队列中基于 qPCR 和 DNA 甲基化的端粒长度测量。

本文引用的文献

1
Telomeres in health and disease.健康与疾病中的端粒。
J Oral Maxillofac Pathol. 2017 Jan-Apr;21(1):87-91. doi: 10.4103/jomfp.JOMFP_39_16.
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Telomere length in psychiatric disorders: Is it more than an ageing marker?精神障碍中的端粒长度:它不仅仅是衰老的标志物吗?
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The source of SYBR green master mix determines outcome of nucleic acid amplification reactions.SYBR Green荧光定量PCR试剂盒的来源决定核酸扩增反应的结果。
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Meta-analysis of Telomere Length in Alzheimer's Disease.阿尔茨海默病中端粒长度的荟萃分析
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Optimization of a Relative Telomere Length Assay by Monochromatic Multiplex Real-Time Quantitative PCR on the LightCycler 480: Sources of Variability and Quality Control Considerations.基于LightCycler 480的单色多重实时定量PCR对相对端粒长度检测方法的优化:变异来源及质量控制考量
J Mol Diagn. 2016 May;18(3):425-437. doi: 10.1016/j.jmoldx.2016.01.004. Epub 2016 Mar 8.
7
Perceived stress and telomere length: A systematic review, meta-analysis, and methodologic considerations for advancing the field.感知压力与端粒长度:系统评价、荟萃分析及该领域进展的方法学考量
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