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从普通海豹(港海豹)中分离出的新种布氏弯曲杆菌。

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

作者信息

Gilbert Maarten J, Zomer Aldert L, Timmerman Arjen J, Spaninks Mirlin P, Rubio-García Ana, Rossen John W, Duim Birgitta, Wagenaar Jaap A

机构信息

Reptile, Amphibian and Fish Conservation Netherlands (RAVON), Nijmegen, The Netherlands.

Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.

出版信息

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.

Abstract

During a study to assess the faecal microbiome of common seals (Phoca vitulina) in a Dutch seal rehabilitation centre, 16S rRNA gene sequences of an unknown Campylobacter taxon were identified. Campylobacter isolates, which differed from the established Campylobacter taxa, were cultured and their taxonomic position was determined by a polyphasic study based on ten isolates. The isolates were characterized by 16S rRNA and atpA gene sequence analyses and by conventional phenotypic testing. Based on the whole genome sequences, the average nucleotide identity and core genome phylogeny were determined. The isolates formed a separate phylogenetic clade, divergent from all other Campylobacter taxa and most closely related to Campylobacter corcagiensis, Campylobacter geochelonis and Campylobacter ureolyticus. The isolates can be distinguished phenotypically from all other Campylobacter taxa based on their lack of motility, growth at 25 °C and growth on MacConkey agar. This study shows that these isolates represent a novel species within the genus Campylobacter, for which the name Campylobacter blaseri sp. nov. is proposed. The type strain for this novel species is 17S00004-5 (=LMG 30333=CCUG 71276).

摘要

在一项评估荷兰海豹康复中心普通海豹(斑海豹)粪便微生物群的研究中,鉴定出了一种未知弯曲杆菌分类单元的16S rRNA基因序列。培养了与已确定的弯曲杆菌分类单元不同的弯曲杆菌分离株,并通过基于十个分离株的多相研究确定了它们的分类地位。通过16S rRNA和atpA基因序列分析以及传统表型测试对分离株进行了表征。基于全基因组序列,确定了平均核苷酸同一性和核心基因组系统发育。这些分离株形成了一个独立的系统发育分支,与所有其他弯曲杆菌分类单元不同,与科氏弯曲杆菌、地龟弯曲杆菌和解脲弯曲杆菌关系最为密切。基于其无运动性、在25℃生长以及在麦康凯琼脂上生长的特性,这些分离株在表型上可与所有其他弯曲杆菌分类单元区分开来。这项研究表明,这些分离株代表弯曲杆菌属内的一个新物种,为此提议将其命名为布拉氏弯曲杆菌(Campylobacter blaseri sp. nov.)。该新物种的模式菌株为17S00004-5(=LMG 30333=CCUG 71276)。

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