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猫源 新种和羊源 新种的分离及基因组特征

Isolation and Genomic Characteristics of Cat-Borne sp. nov. and Sheep-Borne sp. nov.

作者信息

Wang Hairui, Li Ying, Gu Yixin, Zhou Guilan, Chen Xiaoli, Zhang Xin, Shao Zhujun, Zhang Jianzhong, Zhang Maojun

机构信息

State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Rd155, Changbailu, Changping, Beijing 102206, China.

Shunyi District Center for Disease Control and Prevention, Beijing 101320, China.

出版信息

Microorganisms. 2023 Apr 8;11(4):971. doi: 10.3390/microorganisms11040971.

Abstract

Nine novel bacterial strains were isolated from the feces of cats and sheep in 2019 and 2020 in Beijing, China. Cells were 1-3 μm long and ≤0.5 μm wide, Gram-stain negative, microaerobic, motile, oxidase positive, and urease negative. Phylogenetic analyses based on 16S rRNA gene sequences indicated that these nine isolates belong to the genus but formed two robust clades that were clearly separate from the currently recognized species and, respectively, isolated from the cat and sheep. Both these strains shared low 16S rRNA gene sequence similarity, dDDH relatedness, and ANI values with their closest species CCUG 14913 and NCTC 13004, and against each other, which are below the cut-off values generally recognized for isolates of the same species. The genomic DNA G + C contents of type strains XJK22-1 and SYS25-1 were 34.99 mol% and 32.43 mol%, respectively. Electron microscopy showed that these cells were spiral shaped, with bipolar single flagella. Based on results from genotypic, phenotypic, phylogenetic, and phylogenomic analyses, these nine strains represent two novel species within the genus , for which the names sp. nov. (Type strain XJK22-1 = GDMCC 1.3684 = JCM 35847) and sp. nov. (Type strain SYS25-1 = GDMCC 1.3685) are proposed.

摘要

2019年和2020年在中国北京从猫和羊的粪便中分离出9株新型细菌菌株。细胞长1-3μm,宽≤0.5μm,革兰氏染色阴性,微需氧,运动,氧化酶阳性,脲酶阴性。基于16S rRNA基因序列的系统发育分析表明,这9株分离株属于该属,但形成了两个稳健的进化枝,它们与目前公认的物种明显分开,分别从猫和羊中分离得到。这两株菌株与其最接近的物种CCUG 14913和NCTC 13004以及彼此之间的16S rRNA基因序列相似性、dDDH相关性和ANI值都很低,低于通常认为的同一物种分离株的截止值。模式菌株XJK22-1和SYS25-1的基因组DNA G + C含量分别为34.99 mol%和32.43 mol%。电子显微镜显示这些细胞呈螺旋形,有双极单鞭毛。基于基因型、表型、系统发育和系统基因组分析的结果,这9株菌株代表了该属内的两个新物种,为此提出了新物种名称sp. nov.(模式菌株XJK22-1 = GDMCC 1.3684 = JCM 35847)和sp. nov.(模式菌株SYS25-1 = GDMCC 1.3685)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9204/10145079/1ca627815c0e/microorganisms-11-00971-g001.jpg

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