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共识指导方法产生一种热稳定的烷烃产生酶,并鉴定出促进热稳定性的残基。

A consensus-guided approach yields a heat-stable alkane-producing enzyme and identifies residues promoting thermostability.

机构信息

From the Microbial Engineering Group.

DBT-ICGEB Centre for Advanced Bioenergy Research, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067 and.

出版信息

J Biol Chem. 2018 Jun 15;293(24):9148-9161. doi: 10.1074/jbc.RA117.000639. Epub 2018 Apr 9.

DOI:10.1074/jbc.RA117.000639
PMID:29632075
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6005442/
Abstract

Aldehyde-deformylating oxygenase (ADO) is an essential enzyme for production of long-chain alkanes as drop-in biofuels, which are compatible with existing fuel systems. The most active ADOs are present in mesophilic cyanobacteria, especially Given the potential applications of thermostable enzymes in biorefineries, here we generated a thermostable (Cts)-ADO based on a consensus of ADO sequences from several thermophilic cyanobacterial strains. Using an design pipeline and a metagenome library containing 41 hot-spring microbial communities, we created Cts-ADO. Cts-ADO displayed a 3.8-fold increase in pentadecane production on raising the temperature from 30 to 42 °C, whereas ADO from (Np-ADO) exhibited a 1.7-fold decline. 3D structure modeling and molecular dynamics simulations of Cts- and Np-ADO at different temperatures revealed differences between the two enzymes in residues clustered on exposed loops of these variants, which affected the conformation of helices involved in forming the ADO catalytic core. In Cts-ADO, this conformational change promoted ligand binding to its preferred iron, Fe2, in the di-iron cluster at higher temperature, but the reverse was observed in Np-ADO. Detailed mapping of residues conferring Cts-ADO thermostability identified four amino acids, which we substituted individually and together in Np-ADO. Among these substitution variants, A161E was remarkably similar to Cts-ADO in terms of activity optima, kinetic parameters, and structure at higher temperature. A161E was located in loop L6, which connects helices H5 and H6, and supported ligand binding to Fe2 at higher temperatures, thereby promoting optimal activity at these temperatures and explaining the increased thermostability of Cts-ADO.

摘要

醛脱甲醛酶 (ADO) 是生产长链烷烃作为可替代生物燃料的必需酶,这些燃料与现有燃料系统兼容。最活跃的 ADO 存在于嗜温性蓝藻中,特别是 鉴于耐热酶在生物精炼厂中的潜在应用,我们在此基于来自几种嗜热蓝藻菌株的 ADO 序列的共识生成了一种耐热 (Cts)-ADO。使用 设计管道和包含 41 个温泉微生物群落的宏基因组文库,我们创建了 Cts-ADO。当温度从 30°C 升高到 42°C 时,Cts-ADO 使十五烷的产量增加了 3.8 倍,而来自 (Np-ADO)的 ADO 则下降了 1.7 倍。在不同温度下对 Cts-和 Np-ADO 的 3D 结构建模和分子动力学模拟表明,这两种酶在暴露环上聚集的残基之间存在差异,这影响了参与形成 ADO 催化核心的螺旋的构象。在 Cts-ADO 中,这种构象变化促进了配体与其优选铁 Fe2 的结合,在二铁簇中在较高温度下,但在 Np-ADO 中观察到相反的情况。详细的残基图谱确定了赋予 Cts-ADO 耐热性的四个氨基酸,我们在 Np-ADO 中分别和一起取代了这些氨基酸。在这些取代变体中,A161E 在活性最佳、动力学参数和较高温度下的结构方面与 Cts-ADO 非常相似。A161E 位于连接 H5 和 H6 螺旋的 L6 环中,支持配体在较高温度下与 Fe2 的结合,从而促进了在这些温度下的最佳活性,并解释了 Cts-ADO 耐热性的提高。

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