Wangchuk Jigme, Prakash Prem, Bhaumik Prasenjit, Kondabagil Kiran
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India.
Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):198-204. doi: 10.1107/S2053230X18003084. Epub 2018 Mar 22.
Genome packaging is a critical step in the assembly of dsDNA bacteriophages and is carried out by a powerful molecular motor known as the large terminase. To date, wild-type structures of only two large terminase proteins are available, and more structural information is needed to understand the genome-packaging mechanism. Towards this goal, the large and small terminase proteins from bacteriophage N4, which infects the Escherichia coli K12 strain, have been cloned, expressed and purified. The purified putative large terminase protein hydrolyzes ATP, and this is enhanced in the presence of the small terminase. The large terminase protein was crystallized using the sitting-drop vapour-diffusion method and the crystal diffracted to 2.8 Å resolution using a home X-ray source. Analysis of the X-ray diffraction data showed that the crystal belonged to space group P222, with unit-cell parameters a = 53.7, b = 93.6, c = 124.9 Å, α = β = γ = 90°. The crystal had a solvent content of 50.2% and contained one molecule in the asymmetric unit.
基因组包装是双链DNA噬菌体组装过程中的关键步骤,由一种称为大末端酶的强大分子马达执行。迄今为止,仅获得了两种大末端酶蛋白的野生型结构,需要更多的结构信息来理解基因组包装机制。为了实现这一目标,已克隆、表达并纯化了感染大肠杆菌K12菌株的噬菌体N4的大末端酶和小末端酶蛋白。纯化后的推定大末端酶蛋白可水解ATP,并且在小末端酶存在的情况下这种水解作用会增强。使用坐滴气相扩散法使大末端酶蛋白结晶,并使用家用X射线源将晶体衍射至2.8 Å分辨率。对X射线衍射数据的分析表明,该晶体属于空间群P222,晶胞参数为a = 53.7、b = 93.6、c = 124.9 Å,α = β = γ = 90°。该晶体的溶剂含量为50.2%,不对称单元中包含一个分子。