Suppr超能文献

噬菌体N4大型末端酶:表达、纯化及X射线晶体学分析。

Bacteriophage N4 large terminase: expression, purification and X-ray crystallographic analysis.

作者信息

Wangchuk Jigme, Prakash Prem, Bhaumik Prasenjit, Kondabagil Kiran

机构信息

Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India.

出版信息

Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):198-204. doi: 10.1107/S2053230X18003084. Epub 2018 Mar 22.

Abstract

Genome packaging is a critical step in the assembly of dsDNA bacteriophages and is carried out by a powerful molecular motor known as the large terminase. To date, wild-type structures of only two large terminase proteins are available, and more structural information is needed to understand the genome-packaging mechanism. Towards this goal, the large and small terminase proteins from bacteriophage N4, which infects the Escherichia coli K12 strain, have been cloned, expressed and purified. The purified putative large terminase protein hydrolyzes ATP, and this is enhanced in the presence of the small terminase. The large terminase protein was crystallized using the sitting-drop vapour-diffusion method and the crystal diffracted to 2.8 Å resolution using a home X-ray source. Analysis of the X-ray diffraction data showed that the crystal belonged to space group P222, with unit-cell parameters a = 53.7, b = 93.6, c = 124.9 Å, α = β = γ = 90°. The crystal had a solvent content of 50.2% and contained one molecule in the asymmetric unit.

摘要

基因组包装是双链DNA噬菌体组装过程中的关键步骤,由一种称为大末端酶的强大分子马达执行。迄今为止,仅获得了两种大末端酶蛋白的野生型结构,需要更多的结构信息来理解基因组包装机制。为了实现这一目标,已克隆、表达并纯化了感染大肠杆菌K12菌株的噬菌体N4的大末端酶和小末端酶蛋白。纯化后的推定大末端酶蛋白可水解ATP,并且在小末端酶存在的情况下这种水解作用会增强。使用坐滴气相扩散法使大末端酶蛋白结晶,并使用家用X射线源将晶体衍射至2.8 Å分辨率。对X射线衍射数据的分析表明,该晶体属于空间群P222,晶胞参数为a = 53.7、b = 93.6、c = 124.9 Å,α = β = γ = 90°。该晶体的溶剂含量为50.2%,不对称单元中包含一个分子。

相似文献

1
Bacteriophage N4 large terminase: expression, purification and X-ray crystallographic analysis.
Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):198-204. doi: 10.1107/S2053230X18003084. Epub 2018 Mar 22.
2
Crystallization of the nonameric small terminase subunit of bacteriophage P22.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jan 1;67(Pt 1):104-10. doi: 10.1107/S174430911004697X. Epub 2010 Dec 23.
3
Expression, purification, crystallization and preliminary X-ray diffraction analysis of a lactococcal bacteriophage small terminase subunit.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Mar 1;69(Pt 3):275-9. doi: 10.1107/S174430911300184X. Epub 2013 Feb 22.
6
Small terminase couples viral DNA binding to genome-packaging ATPase activity.
Structure. 2012 Aug 8;20(8):1403-13. doi: 10.1016/j.str.2012.05.014. Epub 2012 Jul 5.
8
The putative small terminase from the thermophilic dsDNA bacteriophage G20C is a nine-subunit oligomer.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):876-9. doi: 10.1107/S1744309113017016. Epub 2013 Jul 27.
9
The 1.58 Å resolution structure of the DNA-binding domain of bacteriophage SF6 small terminase provides new hints on DNA binding.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):376-81. doi: 10.1107/S1744309113004399. Epub 2013 Mar 28.
10
Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):817-22. doi: 10.1073/pnas.1110224109. Epub 2011 Dec 29.

本文引用的文献

2
Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.
Annu Rev Virol. 2015 Nov;2(1):351-78. doi: 10.1146/annurev-virology-100114-055212. Epub 2015 Sep 10.
3
Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22.
J Mol Biol. 2015 Oct 9;427(20):3285-3299. doi: 10.1016/j.jmb.2015.08.013. Epub 2015 Aug 21.
4
JPred4: a protein secondary structure prediction server.
Nucleic Acids Res. 2015 Jul 1;43(W1):W389-94. doi: 10.1093/nar/gkv332. Epub 2015 Apr 16.
6
Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage.
Proc Natl Acad Sci U S A. 2013 May 14;110(20):8075-80. doi: 10.1073/pnas.1301133110. Epub 2013 Apr 29.
7
Structure of p22 headful packaging nuclease.
J Biol Chem. 2012 Aug 10;287(33):28196-205. doi: 10.1074/jbc.M112.349894. Epub 2012 Jun 19.
8
Isolation and characterization of a novel indigenous intestinal N4-related coliphage vB_EcoP_G7C.
Virology. 2012 May 10;426(2):93-9. doi: 10.1016/j.virol.2012.01.027. Epub 2012 Feb 15.
9
The bacteriophage DNA packaging machine.
Adv Exp Med Biol. 2012;726:489-509. doi: 10.1007/978-1-4614-0980-9_22.
10
The DNA-packaging nanomotor of tailed bacteriophages.
Nat Rev Microbiol. 2011 Aug 12;9(9):647-57. doi: 10.1038/nrmicro2632.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验