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一种乳酸乳球菌噬菌体小末端酶亚基的表达、纯化、结晶及初步X射线衍射分析

Expression, purification, crystallization and preliminary X-ray diffraction analysis of a lactococcal bacteriophage small terminase subunit.

作者信息

Ren Bin, Pham Tam M, Surjadi Regina, Robinson Christine P, Le Thien-Kim, Chandry P Scott, Peat Thomas S, McKinstry William J

机构信息

Materials Science and Engineering, CSIRO, 343 Royal Parade, Parkville, Victoria 3052, Australia.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Mar 1;69(Pt 3):275-9. doi: 10.1107/S174430911300184X. Epub 2013 Feb 22.

Abstract

Terminases are enzymes that are required for the insertion of a single viral genome into the interior of a viral procapsid by a process referred to as 'encapsulation or packaging'. Many double-stranded DNA viruses such as bacteriophages T3, T4, T7, λ and SPP1, as well as herpes viruses, utilize terminase enzymes for this purpose. All the terminase enzymes described to date require two subunits, a small subunit referred to as TerS and a large subunit referred to as TerL, for in vivo activity. The TerS and TerL subunits interact with each other to form a functional hetero-oligomeric enzyme complex; however the stoichiometry and oligomeric state have not been determined. We have cloned, expressed and purified recombinant small terminase TerS from a 936 lactococcal bacteriophage strain ASCC454, initially isolated from a dairy factory. The terminase was crystallized using a combination of nanolitre sitting drops and vapour diffusion using sodium malonate as the precipitant, and crystallization optimized using standard vapour-diffusion hanging drops set up in the presence of a nitrogen atmosphere. The crystals belong to the P2 space group, with unit-cell parameters a=73.93, b=158.48, c=74.23 Å, and diffract to 2.42 Å resolution using synchrotron radiation. A self-rotation function calculation revealed that the terminase oligomerizes into an octamer in the asymmetric unit, although size-exclusion chromatography suggests that it is possible for it to form an oligomer of up to 13 subunits.

摘要

末端酶是通过所谓的“封装或包装”过程将单个病毒基因组插入病毒原衣壳内部所必需的酶。许多双链DNA病毒,如噬菌体T3、T4、T7、λ和SPP1,以及疱疹病毒,都利用末端酶来实现这一目的。迄今为止描述的所有末端酶在体内发挥活性都需要两个亚基,一个称为TerS的小亚基和一个称为TerL的大亚基。TerS和TerL亚基相互作用形成功能性异源寡聚酶复合物;然而,其化学计量和寡聚状态尚未确定。我们从最初从一家乳制品厂分离出的936型乳酸球菌噬菌体菌株ASCC454中克隆、表达并纯化了重组小末端酶TerS。使用纳升坐滴法和以丙二酸钠为沉淀剂的气相扩散法相结合使末端酶结晶,并在氮气气氛下使用标准气相扩散悬滴法优化结晶。晶体属于P2空间群,晶胞参数a = 73.93、b = 158.48、c = 74.23 Å,使用同步辐射可衍射至2.42 Å分辨率。自旋转函数计算表明,末端酶在不对称单元中寡聚成八聚体,尽管尺寸排阻色谱表明它有可能形成多达13个亚基的寡聚体。

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本文引用的文献

1
Themes and variations of viral small terminase proteins.
Structure. 2012 Aug 8;20(8):1291-2. doi: 10.1016/j.str.2012.07.007.
2
Small terminase couples viral DNA binding to genome-packaging ATPase activity.
Structure. 2012 Aug 8;20(8):1403-13. doi: 10.1016/j.str.2012.05.014. Epub 2012 Jul 5.
3
Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage.
Genome Biol Evol. 2012;4(3):382-93. doi: 10.1093/gbe/evs017. Epub 2012 Feb 21.
4
The bacteriophage DNA packaging machine.
Adv Exp Med Biol. 2012;726:489-509. doi: 10.1007/978-1-4614-0980-9_22.
5
Short noncontractile tail machines: adsorption and DNA delivery by podoviruses.
Adv Exp Med Biol. 2012;726:143-79. doi: 10.1007/978-1-4614-0980-9_7.
6
Structural basis for DNA recognition and loading into a viral packaging motor.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):811-6. doi: 10.1073/pnas.1110270109. Epub 2011 Dec 29.
7
Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):817-22. doi: 10.1073/pnas.1110224109. Epub 2011 Dec 29.
8
The DNA-packaging nanomotor of tailed bacteriophages.
Nat Rev Microbiol. 2011 Aug 12;9(9):647-57. doi: 10.1038/nrmicro2632.
9
Crystallization of the nonameric small terminase subunit of bacteriophage P22.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jan 1;67(Pt 1):104-10. doi: 10.1107/S174430911004697X. Epub 2010 Dec 23.
10
Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine.
Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1971-6. doi: 10.1073/pnas.0908569107. Epub 2010 Jan 19.

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