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从加拿大养殖动物和野生动物中分离出的五株牛分枝杆菌菌株的基因组序列。

Genome Sequences of Five Mycobacterium bovis Strains Isolated from Farmed Animals and Wildlife in Canada.

作者信息

Andrievskaia Olga, Duceppe Marc-Olivier, Lloyd Dara

机构信息

Canadian Food Inspection Agency, Ottawa Laboratory Fallowfield, Ottawa, Ontario, Canada

Canadian Food Inspection Agency, Ottawa Laboratory Fallowfield, Ottawa, Ontario, Canada.

出版信息

Genome Announc. 2018 Apr 12;6(15):e00258-18. doi: 10.1128/genomeA.00258-18.

DOI:10.1128/genomeA.00258-18
PMID:29650575
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5897807/
Abstract

is the causative agent of bovine tuberculosis, an infectious disease that affects both animals and humans and thus presents a risk to public health and the livestock industry. Here, we report the genome sequences of five strains that represent major genotype clusters observed in farmed animals and wildlife in Canada.

摘要

是牛结核病的病原体,牛结核病是一种影响动物和人类的传染病,因此对公共卫生和畜牧业构成风险。在此,我们报告了五个菌株的基因组序列,这些菌株代表了在加拿大养殖动物和野生动物中观察到的主要基因型簇。

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本文引用的文献

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Minimap2: pairwise alignment for nucleotide sequences.Minimap2:核苷酸序列的两两比对。
Bioinformatics. 2018 Sep 15;34(18):3094-3100. doi: 10.1093/bioinformatics/bty191.
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Vet Microbiol. 2018 Feb;214:44-50. doi: 10.1016/j.vetmic.2017.12.005. Epub 2017 Dec 8.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
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Updated Reference Genome Sequence and Annotation of AF2122/97.AF2122/97的更新参考基因组序列及注释
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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