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通过基因芯片分析鉴定坐骨神经损伤后L4背根神经节(DRG)中的关键信号通路和基因

Identification of Key Pathways and Genes in L4 Dorsal Root Ganglion (DRG) After Sciatic Nerve Injury via Microarray Analysis.

作者信息

Zhao He, Duan Li-Jun, Sun Qing-Ling, Gao Yu-Shan, Yang Yong-Dong, Tang Xiang-Sheng, Zhao Ding-Yan, Xiong Yang, Hu Zhen-Guo, Li Chuan-Hong, Chen Si-Xue, Liu Tao, Yu Xing

机构信息

Department of Orthopedics, Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, China.

Department of Orthopedics, Bayannaoer City Hospital, Bayannaoer City, Inner Mongolia, China.

出版信息

J Invest Surg. 2020 Feb;33(2):172-180. doi: 10.1080/08941939.2018.1452996. Epub 2018 Apr 19.

Abstract

: Peripheral nerve injury (PNI) has devastating consequences. Dorsal root ganglion as a pivotal locus participates in the process of neuropathic pain and nerve regeneration. In recent years, gene sequencing technology has seen rapid rise in the biomedicine field. So, we attempt to gain insight into in the mechanism of neuropathic pain and nerve regeneration in the transcriptional level and to explore novel genes through bioinformatics analysis. : The gene expression profiles of GSE96051 were downloaded from GEO database. The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway (KEGG) enrichment analyses were performed, and protein-protein interaction (PPI) network of the differentially expressed genes (DEGs) was constructed by Cytoscape software. : Our results showed that both IL-6 and Jun genes and the signaling pathway of MAPK, apoptosis, P53 present their vital modulatory role in nerve regeneration and neuropathic pain. Noteworthy, 13 hub genes associated with neuropathic pain and nerve regeneration, including Ccl12, Ppp1r15a, Cdkn1a, Atf3, Nts, Dusp1, Ccl7, Csf, Gadd45a, Serpine1, Timp1 were rarely reported in PubMed database, these genes may provide us the new orientation in experimental research and clinical study. : Our results may provide more deep insight into the mechanism and a promising therapeutic target. The next step is to put our emphasis on an experiment level and to verify the novel genes from 13 hub genes.

摘要

外周神经损伤(PNI)会产生严重后果。背根神经节作为一个关键部位,参与神经性疼痛和神经再生过程。近年来,基因测序技术在生物医学领域迅速兴起。因此,我们试图在转录水平深入了解神经性疼痛和神经再生的机制,并通过生物信息学分析探索新基因。:从GEO数据库下载GSE96051的基因表达谱。进行基因本体(GO)和京都基因与基因组百科全书通路(KEGG)富集分析,并使用Cytoscape软件构建差异表达基因(DEG)的蛋白质-蛋白质相互作用(PPI)网络。:我们的结果表明,IL-6和Jun基因以及MAPK、凋亡、P53信号通路在神经再生和神经性疼痛中发挥着重要的调节作用。值得注意的是,13个与神经性疼痛和神经再生相关的枢纽基因,包括Ccl12、Ppp1r15a、Cdkn1a、Atf3、Nts、Dusp1、Ccl7、Csf、Gadd45a、Serpine1、Timp1,在PubMed数据库中很少被报道,这些基因可能为我们的实验研究和临床研究提供新的方向。:我们的结果可能为机制提供更深入的见解和一个有前景的治疗靶点。下一步是将重点放在实验层面,验证这13个枢纽基因中的新基因。

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