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模式菌株（SH6-1）的基因组序列，该菌株是在一次浮游植物大量繁殖期间从北海分离出的该菌群的代表。

Genome sequence of type strain (SH6-1), a representative of the group isolated from the North Sea during a phytoplankton bloom.

作者信息

Bakenhus Insa, Voget Sonja, Poehlein Anja, Brinkhoff Thorsten, Daniel Rolf, Simon Meinhard

机构信息

1Institute for Chemistry and Biology of the Marine Environment (ICBM), University of Oldenburg, Oldenburg, Germany.

2Institute of Microbiology and Genetics, Genomic and Applied Microbiology and Göttingen Genomics Laboratory, University of Göttingen, Göttingen, Germany.

出版信息

Stand Genomic Sci. 2018 Apr 11;13:7. doi: 10.1186/s40793-018-0311-5. eCollection 2018.

DOI:10.1186/s40793-018-0311-5
PMID:29682168
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5896138/
Abstract

SH6-1 Hahnke et al. (Int J Syst Evol Microbiol 62:1619-24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the group within the alphaproteobacterial family . Here we describe the draft genome sequence and annotation of the type strain SH6-1. The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of but points also to interactions with prokaryotic or eukaryotic organisms.

摘要

SH6-1 哈恩克等人（《国际系统与进化微生物学杂志》62:1619 - 24，2012年）是一种从北海南部浮游植物大量繁殖期间分离出的海洋浮游细菌。它属于α-变形菌科内的 类群。在此，我们描述模式菌株SH6-1的基因组草图序列及注释。该基因组由4,106,736个碱基对组成，包含4128个蛋白质编码基因和38个RNA基因。基因组草图序列为至少三个染色体外元件提供了证据，编码了参与二甲基巯基丙酸内盐（DMSP）利用、群体感应、光能异养和IV型分泌系统的基因。这不仅表明它适应 的自由生活方式，还指向其与原核或真核生物的相互作用。 （注：原文中“ ”处信息缺失）

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/d9255dec79e9/40793_2018_311_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/0542c6f3d620/40793_2018_311_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/8cc4cb08ed05/40793_2018_311_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/d9255dec79e9/40793_2018_311_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/0542c6f3d620/40793_2018_311_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/8cc4cb08ed05/40793_2018_311_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9905/5896138/d9255dec79e9/40793_2018_311_Fig3_HTML.jpg

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2
Homoserine Lactones, Methyl Oligohydroxybutyrates, and Other Extracellular Metabolites of Macroalgae-Associated Bacteria of the Roseobacter Clade: Identification and Functions.高丝氨酸内酯、甲基低聚羟基丁酸酯以及玫瑰杆菌属与大型藻类相关细菌的其他细胞外代谢产物：鉴定与功能
Chembiochem. 2015 Sep 21;16(14):2094-107. doi: 10.1002/cbic.201500189. Epub 2015 Aug 19.
3
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4
Rfam 12.0: updates to the RNA families database.Rfam 12.0：RNA家族数据库的更新
Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11.
5
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ISME J. 2015 Feb;9(2):371-84. doi: 10.1038/ismej.2014.134. Epub 2014 Aug 1.
6
The DNA bank network: the start from a german initiative.DNA银行网络：始于一项德国倡议。
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7
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8
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10
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