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On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
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Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.
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Improved gene tree error correction in the presence of horizontal gene transfer.
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The path-label reconciliation (PLR) dissimilarity measure for gene trees.
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Horizontal Gene Transfer Inference: Gene Presence-Absence Outperforms Gene Trees.
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Discovery of a New Starship Transposon Driving the Horizontal Transfer of the Virulence Gene in .
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Current state and future prospects of Horizontal Gene Transfer detection.
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Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes.
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Illuminating the coevolution of photosynthesis and Bacteria.
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本文引用的文献

1
On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
BMC Bioinformatics. 2018 Aug 13;19(Suppl 9):290. doi: 10.1186/s12859-018-2269-0.
2
Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes.
Front Microbiol. 2017 Apr 13;8:632. doi: 10.3389/fmicb.2017.00632. eCollection 2017.
3
Genomic Data Quality Impacts Automated Detection of Lateral Gene Transfer in Fungi.
G3 (Bethesda). 2017 Apr 3;7(4):1301-1314. doi: 10.1534/g3.116.038448.
4
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.
Bioinformatics. 2016 Jul 1;32(13):2056-8. doi: 10.1093/bioinformatics/btw105. Epub 2016 Feb 26.
5
HGTree: database of horizontally transferred genes determined by tree reconciliation.
Nucleic Acids Res. 2016 Jan 4;44(D1):D610-9. doi: 10.1093/nar/gkv1245. Epub 2015 Nov 17.
7
Phylogenetic analysis of HpnP reveals the origin of 2-methylhopanoid production in Alphaproteobacteria.
Geobiology. 2015 May;13(3):267-77. doi: 10.1111/gbi.12129. Epub 2015 Jan 29.
9
A Bayesian method for analyzing lateral gene transfer.
Syst Biol. 2014 May;63(3):409-20. doi: 10.1093/sysbio/syu007. Epub 2014 Feb 20.
10
Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.
J Comput Biol. 2013 Oct;20(10):738-54. doi: 10.1089/cmb.2013.0073. Epub 2013 Sep 14.

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