Dukhyil Abdul Aziz A Bin
Department of Medical Laboratory Sciences, College of Applied Medical Sciences, Majmaah University, Al Majmaah- 11952, Saudi Arabia.
Infect Disord Drug Targets. 2019;19(4):388-393. doi: 10.2174/1871526518666180502141849.
1.2-2.0 million cases of leishmaniasis occur annually throughout the world. The available drugs like Amphotericin B, antimonials and miltefosine are unable to fulfill the need due to less effectiveness, high toxicity, resistance, high cost and complex route of administration. Leishmania survives inside the macrophages through different evasion mechanisms; one of that is activation of its trypanothione reductase enzyme which neutralizes the reactive oxygen species generated inside the macrophages to kill the parasites. This enzyme is unique and absent in human, therefore in this study I targeted it for screening of new inhibitors to fight against leishmaniasis.
Homology modeling of Leishmania major trypanothione reductase was performed using Phyre2 server. The homology based modelled protein was validated with PROCHECK analysis. Ligplot analysis was performed to predict the active residues inside the binding pocket. Further, virtual screening of ligand library containing 113 ligands from PubChem Bioassay was performed against the target using AutoDock Vina Tool.
Top five ligands showed best binding affinity. The molecule having PubChem CID: 10553746 showed highest binding affinity of -11.3 kcal/mol. Over all this molecule showed highest binding affinity and moderate number of hydrogen bonds. Hopefully, this molecule will be able to block the activity of target enzyme, trypanothione reductase of Leishmania major effectively and may work as new molecules to fight against cutaneous leishmanaisis.
This study will help the researchers to identify the new molecules which can block the activity of leishmanial-trypanothione reductase, a novel enzyme of trypanosomatids. These screened inhibitors may also be effective not only in leishmaniasis but also other trypanosomatid-mediated infectious diseases.
全世界每年有120万至200万例利什曼病病例。现有的药物如两性霉素B、锑剂和米替福新,由于疗效欠佳、毒性高、耐药性、成本高及给药途径复杂等原因,无法满足需求。利什曼原虫通过不同的逃避机制在巨噬细胞内存活;其中之一是激活其锥虫硫醇还原酶,该酶可中和巨噬细胞内产生的活性氧以杀死寄生虫。这种酶是独特的,在人体内不存在,因此在本研究中,我将其作为靶点来筛选对抗利什曼病的新抑制剂。
使用Phyre2服务器对硕大利什曼原虫锥虫硫醇还原酶进行同源建模。基于同源性建模的蛋白质通过PROCHECK分析进行验证。进行Ligplot分析以预测结合口袋内的活性残基。此外,使用AutoDock Vina工具对来自PubChem生物测定的包含113种配体的配体库针对该靶点进行虚拟筛选。
排名前五的配体显示出最佳结合亲和力。具有PubChem CID: 10553746的分子显示出最高结合亲和力,为-11.3千卡/摩尔。总体而言,该分子显示出最高结合亲和力和适度数量的氢键。有望该分子能够有效阻断主要硕大利什曼原虫靶点酶锥虫硫醇还原酶的活性,并可能作为对抗皮肤利什曼病的新分子发挥作用。
本研究将帮助研究人员识别可阻断利什曼原虫锥虫硫醇还原酶活性的新分子,该酶是锥虫科的一种新型酶。这些筛选出的抑制剂不仅可能对利什曼病有效,而且对其他锥虫科介导的传染病也可能有效。