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利用计算研究和对三磷酸鸟苷还原酶的生物评估鉴定潜在的抗利什曼原虫药物。

Identification of potential anti-leishmanial agents using computational investigation and biological evaluation against trypanothione reductase.

机构信息

Molecular & Structural Biology Division, CSIR-Central Drug Research Institute, Lucknow, India.

Biochemistry Division, CSIR-Central Drug Research Institute, Lucknow, India.

出版信息

J Biomol Struct Dyn. 2021 Feb;39(3):960-969. doi: 10.1080/07391102.2020.1721330. Epub 2020 Feb 10.

Abstract

Trypanothione reductase of is a flavin adenine dinucleotide containing homodimeric protein essential for parasite survival. The flavoenzyme utilizes nicotinamide adenine dinucleotide phosphate in the reaction to convert oxidized trypanothione to reduced trypanothione which is further used up by tryparedoxin/tryparedoxin peroxidase system to neutralize the reactive oxygen species generated by the macrophages. Some of the drugs previously reported against the disease include sodium stibogluconate, miltefosine and amphotericin B. However, due to the resistance and toxicity problem associated with these molecules, there is an urgent need to develop new drugs against . Trypanothione reductase of is one such essential target whose inhibition could lead to a decline in parasite growth. In this work, we have performed a computational studies using Maybridge library of chemical compounds to identify potential inhibitors of Trypanothione reductase of . Structure-based virtual screening method in combination with molecular docking was employed to identify and prioritize 30 compounds which were further subjected to molecular dynamics simulation. Ten compounds which showed stable ligand root-mean-square deviation plot, c-alpha backbone and root-mean-square fluctuation were considered for trypanothione reductase inhibition assay and subsequent inhibition studies of parasite growth. Enzyme inhibition assay resulted in shortlisting of four compounds that were found to inhibit Trypanothione reductase of . Subsequently, the anti-leishmanial screening highlighted one compound as the potential anti-leishmanial agent, with IC value of 15.2 µM, that can be further optimised with medicinal chemistry efforts to improve its activity. Communicated by Ramaswamy H. Sarma.

摘要

锥虫硫醇还原酶是一种黄素腺嘌呤二核苷酸(FAD)包含的同二聚体蛋白,对寄生虫的生存至关重要。该黄素酶在反应中利用烟酰胺腺嘌呤二核苷酸磷酸(NADP)将氧化型锥虫硫醇转化为还原型锥虫硫醇,还原型锥虫硫醇进一步被硫氧还蛋白/硫氧还蛋白过氧化物酶系统消耗,以中和巨噬细胞产生的活性氧。以前报道的一些针对该疾病的药物包括葡萄糖酸锑钠、米替福新和两性霉素 B。然而,由于这些分子与耐药性和毒性问题相关,因此迫切需要开发针对的新药。锥虫硫醇还原酶是这样的一个重要靶标,其抑制可能导致寄生虫生长下降。在这项工作中,我们使用 Maybridge 化学化合物库进行了计算研究,以鉴定锥虫硫醇还原酶的潜在抑制剂。采用基于结构的虚拟筛选方法结合分子对接来鉴定和优先选择 30 种化合物,然后对其进行分子动力学模拟。对显示出稳定配体均方根偏差图、C-α 主链和均方根波动的 10 种化合物进行了锥虫硫醇还原酶抑制测定和随后的寄生虫生长抑制研究。酶抑制测定结果确定了四种化合物可以抑制锥虫硫醇还原酶,随后的抗利什曼原虫筛选突出了一种化合物作为潜在的抗利什曼原虫药物,其 IC 值为 15.2 μM,可以通过药物化学努力进一步优化其活性。由 Ramaswamy H. Sarma 传达。

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