Departments of Biological Sciences and Bioengineering , Lehigh University , Bethlehem 18015 , Pennsylvania , United States.
J Chem Theory Comput. 2018 Jun 12;14(6):2829-2833. doi: 10.1021/acs.jctc.8b00140. Epub 2018 May 14.
We have devised a practical simulation protocol for quantitative characterization of cholesterol (Chol) partitioning between bilayers with different lipid types. The simulation model contains two patches of laterally contacting lipid bilayers, where the host lipids of each bilayer are allowed to self-adjust their packing. For two combinations of bilayers with different lipid types, 1,2-dioleoyl- sn-glycero-3-phosphocholine (DOPC)/1-palmitoyl-2-oleoyl- sn-glycero-3-phosphocholine (POPC) and 1,2-dipalmitoyl- sn-glycero-3-phosphocholine (DPPC), the simulation model has been verified by self-adjusted lipid packing in each bilayer, convergence of Chol partitioning between different Chol initial distributions, and relative diffusion coefficients consistent to those from experiments. The calculated Chol partition coefficient between POPC and DOPC bilayers from the Chol partitioning simulations in the POPC-DPPC and DOPC-DPPC binary bilayer systems shows an excellent agreement with that from available Chol exchange experiments between 1-stearoyl-2-oleoyl- sn-glycero-3-phosphocholine(SOPC)/DOPC vesicles and β-cyclodextrins, which further validates the simulation protocol and illustrates its applicability to any molecular partitioning in the binary bilayer system.
我们设计了一种实用的模拟方案,用于定量描述具有不同脂质类型的双层之间胆固醇(Chol)的分配。模拟模型包含两个横向接触的脂质双层斑块,其中每个双层的主脂质允许自行调整其堆积。对于两种不同脂质类型的双层组合,1,2-二油酰基-sn-甘油-3-磷酸胆碱(DOPC)/1-棕榈酰基-2-油酰基-sn-甘油-3-磷酸胆碱(POPC)和 1,2-二棕榈酰基-sn-甘油-3-磷酸胆碱(DPPC),通过在每个双层中的脂质自调整堆积、不同 Chol 初始分布之间的 Chol 分配收敛以及与实验一致的相对扩散系数,验证了模拟模型。从 POPC-DPPC 和 DOPC-DPPC 二元双层系统中的 Chol 分配模拟计算得到的 POPC 和 DOPC 双层之间的 Chol 分配系数与 1-硬脂酰基-2-油酰基-sn-甘油-3-磷酸胆碱(SOPC)/DOPC 囊泡与β-环糊精之间可用的 Chol 交换实验得到的分配系数非常吻合,进一步验证了模拟方案,并说明了其在二元双层系统中任何分子分配中的适用性。