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本文引用的文献

1
Identification of Four Distinct Phylogenetic Groups in With Fish Host Associations.鉴定与鱼类宿主关联的四个不同系统发育组。
Front Microbiol. 2018 Mar 13;9:452. doi: 10.3389/fmicb.2018.00452. eCollection 2018.
2
The Type IX Secretion System Is Required for Virulence of the Fish Pathogen Flavobacterium columnare.IX型分泌系统是鱼类病原菌柱状黄杆菌致病力所必需的。
Appl Environ Microbiol. 2017 Nov 16;83(23). doi: 10.1128/AEM.01769-17. Print 2017 Dec 1.
3
Draft Genome Sequence of the Fish Pathogen Strain CSF-298-10.鱼类病原体CSF-298-10菌株的基因组序列草图
Genome Announc. 2017 Apr 13;5(15):e00173-17. doi: 10.1128/genomeA.00173-17.
4
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
5
Optimized reverse primer for 16S-RFLP analysis and genomovar assignment of Flavobacterium columnare.用于柱状黄杆菌16S-RFLP分析和基因分型的优化反向引物。
J Fish Dis. 2017 Aug;40(8):1103-1108. doi: 10.1111/jfd.12583. Epub 2016 Dec 16.
6
Complete Genome Sequence of the Fish Pathogen Flavobacterium columnare Pf1.鱼类病原菌柱状黄杆菌Pf1的全基因组序列
Genome Announc. 2016 Sep 1;4(5):e00900-16. doi: 10.1128/genomeA.00900-16.
7
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
PHASTER: a better, faster version of the PHAST phage search tool.PHASTER：PHAST噬菌体搜索工具的一个更好、更快的版本。
Nucleic Acids Res. 2016 Jul 8;44(W1):W16-21. doi: 10.1093/nar/gkw387. Epub 2016 May 3.
9
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
10
Columnaris disease in fish: a review with emphasis on bacterium-host interactions.鱼类柱状病：综述及重点关注细菌-宿主相互作用。
Vet Res. 2013 Apr 24;44(1):27. doi: 10.1186/1297-9716-44-27.

鱼类病原菌柱状黄杆菌菌株MS-FC-4的基因组序列草图

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain MS-FC-4.

作者信息

Bartelme Ryan P, Barbier Paul, Lipscomb Ryan S, LaPatra Scott E, Newton Ryan J, Evenhuis Jason P, McBride Mark J

机构信息

School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.

Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, USA.

出版信息

Genome Announc. 2018 May 17;6(20):e00429-18. doi: 10.1128/genomeA.00429-18.

DOI:10.1128/genomeA.00429-18
PMID:29773635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5958253/
Abstract

MS-FC-4 is a highly virulent genetic group 1 (formerly genomovar I) strain isolated from rainbow trout (). The draft genome consists of three contigs totaling 3,449,277 bp with 2,811 predicted open reading frames. MS-FC-4 is a model strain for functional genomic analyses.

摘要

MS-FC-4是从虹鳟鱼中分离出的一种高毒力的第1基因群（以前的基因变种I）菌株。基因组草图由3个重叠群组成，总计3,449,277 bp，有2,811个预测的开放阅读框。MS-FC-4是用于功能基因组分析的模式菌株。