Moss Nathan A, Leao Tiago, Glukhov Evgenia, Gerwick Lena, Gerwick William H
Scripps Institution of Oceanography, University of California, San Diego, CA, United States.
Scripps Institution of Oceanography, University of California, San Diego, CA, United States; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, CA, United States.
Methods Enzymol. 2018;604:3-43. doi: 10.1016/bs.mie.2018.02.014. Epub 2018 Apr 27.
Decreasing sequencing costs has sparked widespread investigation of the use of microbial genomics to accelerate the discovery and development of natural products for therapeutic uses. Tropical marine filamentous cyanobacteria have historically produced many structurally novel natural products, and therefore present an excellent opportunity for the systematic discovery of new metabolites via the information derived from genomics and molecular genetics. Adequate knowledge transfer and institutional know-how are important to maintain the capability for studying filamentous cyanobacteria due to their unusual microbial morphology and characteristics. Here, we describe workflows, procedures, and commentary on sample collection, cultivation, genomic DNA generation, bioinformatics tools, and biosynthetic pathway analysis concerning filamentous cyanobacteria.
测序成本的降低引发了人们对利用微生物基因组学加速用于治疗用途的天然产物发现与开发的广泛研究。热带海洋丝状蓝细菌历来产生了许多结构新颖的天然产物,因此通过基因组学和分子遗传学获得的信息为系统发现新的代谢产物提供了绝佳机会。由于丝状蓝细菌独特的微生物形态和特征,充分的知识转移和机构专业技能对于维持研究丝状蓝细菌的能力很重要。在此,我们描述了有关丝状蓝细菌的样本采集、培养、基因组DNA生成、生物信息学工具和生物合成途径分析的工作流程、程序及评论。