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使用计算建模来增强转化研究。

Reverse Translation: Using Computational Modeling to Enhance Translational Research.

机构信息

From the Dorothy M. Davis Heart and Lung Research Institute (D.G., T.J.H., L.E.W.).

The Ohio State University Wexner Medical Center, Columbus; Department of Biomedical Engineering, College of Engineering (D.G., T.J.H.).

出版信息

Circ Res. 2018 May 25;122(11):1496-1498. doi: 10.1161/CIRCRESAHA.118.313003.

DOI:10.1161/CIRCRESAHA.118.313003
PMID:29798899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5978754/
Abstract

Animal models provide powerful tools for examining human disease; however, translation of findings from these models to human patients is often challenging. To this end, we discuss modern tools to support the process of selecting and validating animal models with relevance to humans. We draw from data mining and computational modeling approaches to examine how large datasets may be leveraged to identify suitable models with the greatest translational potential.

摘要

动物模型为研究人类疾病提供了强有力的工具;然而,将这些模型的研究结果转化为人类患者往往具有挑战性。为此,我们讨论了支持选择和验证与人类相关的动物模型的现代工具。我们借鉴数据挖掘和计算建模方法,研究如何利用大型数据集来识别具有最大转化潜力的合适模型。

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本文引用的文献

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Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury.基因表达分析以评估啮齿动物模型与人类肺损伤的相关性。
Am J Respir Cell Mol Biol. 2017 Aug;57(2):184-192. doi: 10.1165/rcmb.2016-0395OC.
2
Airborne hazards exposure and respiratory health of Iraq and Afghanistan veterans.伊拉克和阿富汗退伍军人的空气传播危害暴露与呼吸健康。
Epidemiol Rev. 2015;37:116-30. doi: 10.1093/epirev/mxu009. Epub 2015 Jan 14.
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Running rescues defective adult neurogenesis by shortening the length of the cell cycle of neural stem and progenitor cells.跑步通过缩短神经干细胞和祖细胞的细胞周期长度来挽救有缺陷的成体神经发生。
Stem Cells. 2014 Jul;32(7):1968-82. doi: 10.1002/stem.1679.
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Genomic responses in mouse models poorly mimic human inflammatory diseases.小鼠模型中的基因组反应与人类炎症性疾病的反应相差很大。
Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3507-12. doi: 10.1073/pnas.1222878110. Epub 2013 Feb 11.
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A computational model to predict the effects of class I anti-arrhythmic drugs on ventricular rhythms.一个用于预测 I 类抗心律失常药物对心室节律影响的计算模型。
Sci Transl Med. 2011 Aug 31;3(98):98ra83. doi: 10.1126/scitranslmed.3002588.
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Particulate matter exposure exacerbates high glucose-induced cardiomyocyte dysfunction through ROS generation.颗粒物暴露通过产生 ROS 加剧高糖诱导的心肌细胞功能障碍。
PLoS One. 2011;6(8):e23116. doi: 10.1371/journal.pone.0023116. Epub 2011 Aug 5.
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Characterizing mineral dusts and other aerosols from the Middle East--Part 2: grab samples and re-suspensions.表征中东地区的矿物粉尘及其他气溶胶——第2部分:采集样本和再悬浮颗粒物
Inhal Toxicol. 2009 Feb;21(4):327-36. doi: 10.1080/08958370802464299.
8
Aerobic fitness is associated with hippocampal volume in elderly humans.有氧适能与老年人的海马体体积相关。
Hippocampus. 2009 Oct;19(10):1030-9. doi: 10.1002/hipo.20547.
9
GenMiner: mining non-redundant association rules from integrated gene expression data and annotations.GenMiner:从整合的基因表达数据和注释中挖掘非冗余关联规则。
Bioinformatics. 2008 Nov 15;24(22):2643-4. doi: 10.1093/bioinformatics/btn490. Epub 2008 Sep 17.
10
Arteriogenesis: the development and growth of collateral arteries.动脉生成:侧支动脉的发育与生长。
Microcirculation. 2003 Jan;10(1):83-97. doi: 10.1038/sj.mn.7800173.