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人类全细胞建模蓝图。

A blueprint for human whole-cell modeling.

作者信息

Szigeti Balázs, Roth Yosef D, Sekar John A P, Goldberg Arthur P, Pochiraju Saahith C, Karr Jonathan R

机构信息

Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, 10029, USA.

出版信息

Curr Opin Syst Biol. 2018 Feb;7:8-15. doi: 10.1016/j.coisb.2017.10.005. Epub 2017 Nov 9.

DOI:10.1016/j.coisb.2017.10.005
PMID:29806041
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5966287/
Abstract

Whole-cell dynamical models of human cells are a central goal of systems biology. Such models could help researchers understand cell biology and help physicians treat disease. Despite significant challenges, we believe that human whole-cell models are rapidly becoming feasible. To develop a plan for achieving human whole-cell models, we analyzed the existing models of individual cellular pathways, surveyed the biomodeling community, and reflected on our experience developing whole-cell models of bacteria. Based on these analyses, we propose a plan for a project, termed the , to achieve human whole-cell models. The foundations of the plan include technology development, standards development, and interdisciplinary collaboration.

摘要

人类细胞的全细胞动力学模型是系统生物学的核心目标。这样的模型有助于研究人员理解细胞生物学,并帮助医生治疗疾病。尽管存在重大挑战,但我们相信人类全细胞模型正迅速变得可行。为了制定实现人类全细胞模型的计划,我们分析了现有的单个细胞通路模型,调查了生物建模界,并反思了我们构建细菌全细胞模型的经验。基于这些分析,我们提出了一个名为“ ”的项目计划,以实现人类全细胞模型。该计划的基础包括技术开发、标准制定和跨学科合作。

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本文引用的文献

1
Emerging whole-cell modeling principles and methods.新兴的全细胞建模原理和方法。
Curr Opin Biotechnol. 2018 Jun;51:97-102. doi: 10.1016/j.copbio.2017.12.013. Epub 2017 Dec 21.
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A pathology atlas of the human cancer transcriptome.人类癌症转录组病理学图谱。
Science. 2017 Aug 18;357(6352). doi: 10.1126/science.aan2507.
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Single-Cell Multiomics: Multiple Measurements from Single Cells.单细胞多组学:来自单细胞的多重测量
Trends Genet. 2017 Feb;33(2):155-168. doi: 10.1016/j.tig.2016.12.003. Epub 2017 Jan 13.
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Recon 2.2: from reconstruction to model of human metabolism.Recon 2.2:从重建到人类代谢模型
Metabolomics. 2016;12:109. doi: 10.1007/s11306-016-1051-4. Epub 2016 Jun 7.
5
Toward Community Standards and Software for Whole-Cell Modeling.迈向全细胞建模的社区标准和软件。
IEEE Trans Biomed Eng. 2016 Oct;63(10):2007-14. doi: 10.1109/TBME.2016.2560762. Epub 2016 Jun 10.
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The evolution of standards and data management practices in systems biology.系统生物学中标准与数据管理实践的演变
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Why Build Whole-Cell Models?为什么构建全细胞模型?
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Curr Opin Microbiol. 2015 Oct;27:18-24. doi: 10.1016/j.mib.2015.06.004. Epub 2015 Jun 24.
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BioModels: ten-year anniversary.生物模型:十周年纪念。
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