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氢键网络的动态变化调控蓝色铜蛋白中的异常电子转移动力学。

Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein.

机构信息

Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125.

Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139.

出版信息

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):6129-6134. doi: 10.1073/pnas.1805719115. Epub 2018 May 29.

DOI:10.1073/pnas.1805719115
PMID:29844178
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6004490/
Abstract

We combine experimental and computational methods to address the anomalous kinetics of long-range electron transfer (ET) in mutants of azurin. ET rates and driving forces for wild type (WT) and three N47X mutants (X = L, S, and D) of Ru(2,2'-bipyridine) (imidazole)(His83) azurin are reported. An enhanced ET rate for the N47L mutant suggests either an increase of the donor-acceptor (DA) electronic coupling or a decrease in the reorganization energy for the reaction. The underlying atomistic features are investigated using a recently developed nonadiabatic molecular dynamics method to simulate ET in each of the azurin mutants, revealing unexpected aspects of DA electronic coupling. In particular, WT azurin and all studied mutants exhibit more DA compression during ET (>2 Å) than previously recognized. Moreover, it is found that DA compression involves an extended network of hydrogen bonds, the fluctuations of which gate the ET reaction, such that DA compression is facilitated by transiently rupturing hydrogen bonds. It is found that the N47L mutant intrinsically disrupts this hydrogen-bond network, enabling particularly facile DA compression. This work, which reveals the surprisingly fluctional nature of ET in azurin, suggests that hydrogen-bond networks can modulate the efficiency of long-range biological ET.

摘要

我们结合实验和计算方法来研究天青蛋白突变体中长程电子转移(ET)的异常动力学。报告了野生型(WT)和 Ru(2,2'-联吡啶)(咪唑)(His83)天青蛋白的三个 N47X 突变体(X = L、S 和 D)的 ET 速率和驱动力。N47L 突变体的 ET 速率增强表明供体-受体(DA)电子耦合增加或反应的重组能降低。使用最近开发的非绝热分子动力学方法研究每个天青蛋白突变体中的 ET,揭示了 DA 电子耦合的意外特征。特别是,WT 天青蛋白和所有研究的突变体在 ET 过程中表现出比以前认识到的更大的 DA 压缩(>2 Å)。此外,发现 DA 压缩涉及氢键的扩展网络,其波动控制 ET 反应,使得氢键的暂时断裂促进了 DA 压缩。发现 N47L 突变体本质上破坏了这个氢键网络,从而使 DA 压缩特别容易。这项工作揭示了天青蛋白中 ET 的惊人的灵活性,表明氢键网络可以调节长程生物 ET 的效率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/95246f81c2eb/pnas.1805719115fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/64a67e598c58/pnas.1805719115fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/ce8dfacafdd8/pnas.1805719115fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/0f8c84539862/pnas.1805719115fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/b2777d5184a4/pnas.1805719115fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/68a9bcafaa6a/pnas.1805719115fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/95246f81c2eb/pnas.1805719115fig06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/64a67e598c58/pnas.1805719115fig01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/ce8dfacafdd8/pnas.1805719115fig02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/0f8c84539862/pnas.1805719115fig03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/b2777d5184a4/pnas.1805719115fig04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/68a9bcafaa6a/pnas.1805719115fig05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f24/6004490/95246f81c2eb/pnas.1805719115fig06.jpg

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