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基于蚁群优化算法的拉曼光谱特征选择用于乳腺癌诊断

Raman spectral feature selection using ant colony optimization for breast cancer diagnosis.

作者信息

Fallahzadeh Omid, Dehghani-Bidgoli Zohreh, Assarian Mohammad

机构信息

Department of Electrical and Computer Engineering, Kashan Branch, Islamic Azad University, Kashan, Iran.

出版信息

Lasers Med Sci. 2018 Nov;33(8):1799-1806. doi: 10.1007/s10103-018-2544-3. Epub 2018 Jun 4.

DOI:10.1007/s10103-018-2544-3
PMID:29862464
Abstract

Pathology as a common diagnostic test of cancer is an invasive, time-consuming, and partially subjective method. Therefore, optical techniques, especially Raman spectroscopy, have attracted the attention of cancer diagnosis researchers. However, as Raman spectra contain numerous peaks involved in molecular bounds of the sample, finding the best features related to cancerous changes can improve the accuracy of diagnosis in this method. The present research attempted to improve the power of Raman-based cancer diagnosis by finding the best Raman features using the ACO algorithm. In the present research, 49 spectra were measured from normal, benign, and cancerous breast tissue samples using a 785-nm micro-Raman system. After preprocessing for removal of noise and background fluorescence, the intensity of 12 important Raman bands of the biological samples was extracted as features of each spectrum. Then, the ACO algorithm was applied to find the optimum features for diagnosis. As the results demonstrated, by selecting five features, the classification accuracy of the normal, benign, and cancerous groups increased by 14% and reached 87.7%. ACO feature selection can improve the diagnostic accuracy of Raman-based diagnostic models. In the present study, features corresponding to ν(C-C) αhelix proline, valine (910-940), νs(C-C) skeletal lipids (1110-1130), and δ(CH2)/δ(CH3) proteins (1445-1460) were selected as the best features in cancer diagnosis.

摘要

病理学作为癌症的一种常见诊断测试,是一种侵入性、耗时且部分主观的方法。因此,光学技术,尤其是拉曼光谱,已引起癌症诊断研究人员的关注。然而,由于拉曼光谱包含与样品分子键相关的众多峰,找到与癌变变化相关的最佳特征可以提高该方法的诊断准确性。本研究试图通过使用蚁群优化(ACO)算法找到最佳拉曼特征来提高基于拉曼的癌症诊断能力。在本研究中,使用785纳米的显微拉曼系统从正常、良性和癌性乳腺组织样本中测量了49个光谱。在进行去除噪声和背景荧光的预处理后,提取生物样本12个重要拉曼带的强度作为每个光谱的特征。然后,应用蚁群优化算法找到诊断的最佳特征。结果表明,通过选择五个特征,正常、良性和癌性组的分类准确率提高了14%,达到87.7%。蚁群优化特征选择可以提高基于拉曼的诊断模型的诊断准确性。在本研究中,对应于ν(C-C)α螺旋脯氨酸、缬氨酸(910 - 940)、νs(C-C)骨架脂质(1110 - 1130)和δ(CH2)/δ(CH3)蛋白质(1445 - 1460)的特征被选为癌症诊断中的最佳特征。

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本文引用的文献

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Raman spectroscopy for cancer detection and cancer surgery guidance: translation to the clinics.拉曼光谱学在癌症检测和癌症手术指导中的应用:向临床的转化。
Analyst. 2017 Aug 21;142(17):3025-3047. doi: 10.1039/c7an00957g.
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Raman technologies in cancer diagnostics.用于癌症诊断的拉曼技术。
Analyst. 2016 Jan 21;141(2):476-503. doi: 10.1039/c5an01786f.
3
Real-time in vivo cancer diagnosis using Raman spectroscopy.使用拉曼光谱进行实时体内癌症诊断。
Health Syst (Basingstoke). 2021 Aug 25;11(4):303-333. doi: 10.1080/20476965.2021.1966324. eCollection 2022.
4
Use of Raman spectroscopy to evaluate the biochemical composition of normal and tumoral human brain tissues for diagnosis.利用拉曼光谱评估正常和肿瘤人类脑组织的生化成分用于诊断。
Lasers Med Sci. 2022 Feb;37(1):121-133. doi: 10.1007/s10103-020-03173-1. Epub 2020 Nov 6.
J Biophotonics. 2015 Jul;8(7):527-45. doi: 10.1002/jbio.201400026. Epub 2014 Sep 12.
4
Raman spectroscopy for the detection of cancers and precancers.用于检测癌症和癌前病变的拉曼光谱学。
J Biomed Opt. 1996 Jan;1(1):31-70. doi: 10.1117/12.227815.
5
In vivo diagnosis of gastric cancer using Raman endoscopy and ant colony optimization techniques.基于拉曼内镜和蚁群优化技术的胃癌体内诊断。
Int J Cancer. 2011 Jun 1;128(11):2673-80. doi: 10.1002/ijc.25618. Epub 2010 Oct 8.