Suppr超能文献

氢键在质子转移下自离解的拓扑模型的结构方面。

Structural aspects of the topological model of the hydrogen bond in water on auto-dissociation via proton transfer.

机构信息

Department of Materials Science and Engineering, Rutgers University, Piscataway, New Jersey, USA.

出版信息

Phys Chem Chem Phys. 2018 Jun 20;20(24):16414-16427. doi: 10.1039/c8cp02592d.

Abstract

Molecular dynamics (MD) simulations were used to investigate the structure and lifetimes of hydrogen bonds and auto dissociation via proton transfer in bulk water using a reactive and dissociative all-atom potential that has previously been shown to match a variety of water properties and proton transfer. Using the topological model, each molecule's donated and accepted hydrogen bonds were labeled relative to the other hydrogen bonds on neighboring waters, providing a description of the effect of these details on the structure, dynamics and autoionization of water molecules. In agreement with prior data, asymmetric bonding at the sub-100 femtosecond timescale is observed, as well as the existence of linear, bifurcated, and dangling hydrogen bonds. The lifetime of the H-bond, 2.1 ps, is consistent with experimental data, with short time librations on the order of femtoseconds. The angular correlation functions, the presence of a second shell water entering the first shell, and OH vibrational stretch frequencies were all consistent with experiment or ab initio calculations. The simulations show short-lived (femtoseconds) dissociation of a small fraction of water molecules followed by rapid recombination. The role of the other H-bonds to the acceptor and on the donor plays an important part in proton transfer between the molecules in auto dissociation and is consistent with the role of a strong electric field caused by local (first and second shell) waters on initiating dissociation. The number of H-bonds to the donor water is 4.3 per molecule in the simulations, consistent with previous data regarding the number of hydrogen bonds required to generate this strong local electric field that enhances dissociation. The continuous lifetime autocorrelation function of the H-bond for those molecules that experience dissociation is considerably longer than that for all molecules that show no proton transfer.

摘要

采用反应性和离解性全原子势对氢键的结构和质子转移导致的自离解寿命进行了研究,该势在之前的研究中已被证明能够匹配多种水特性和质子转移。使用拓扑模型,相对于相邻水分子上的其他氢键,对每个分子的供体和受体氢键进行了标记,从而提供了这些细节对水分子结构、动力学和自离解的影响的描述。与之前的数据一致,在亚 100 飞秒的时间尺度上观察到了不对称键合,以及线性、分叉和悬垂氢键的存在。氢键的寿命为 2.1 ps,与实验数据一致,短时间内的摆动约为飞秒级。角相关函数、第二个壳层的水分子进入第一个壳层的存在以及 OH 振动伸缩频率都与实验或从头算计算一致。模拟显示,一小部分水分子发生了短寿命(飞秒级)的离解,随后迅速重组。接受体和供体上的其他氢键在自离解过程中质子转移中起着重要作用,这与由局部(第一和第二壳层)水分子引起的强电场在引发离解方面的作用一致。在模拟中,每个水分子的氢键数为 4.3,这与先前关于生成增强离解所需的氢键数的数据一致。经历离解的那些分子的氢键连续寿命自相关函数明显长于没有质子转移的所有分子的氢键连续寿命自相关函数。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验